Rh6AG179100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
30898706 .. 30901313
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG179100.1

Sequence Viewer

Length: 384 bp
ATGAAGAATCAATTGGACGACGTCATTAAGGAGAAGGATGGGTTCATGGTTGAGATTGGGAATTCGTTATCTAATGTTCGAGGAATGGCCATGGAAAGTCAGCCATTGGCCTACAAGACCTCCCTAATTGTGGTAAGAATTTTTGGTTCTCAATTTTTTTTGGGTCAATTGGTTTATGAAGAAATGGGAGGCAAACTTATATATATAAACTTGTTTAGATCAAAGATATATATATATATATATATACTGAAATTTTCCATCCACATCAGTTTAATTCCCTCCCTTTTTTTCCGTTCCCCGTTTCTAAACACGATCAAACACACTGCTCTTTATGCCCCTCTTATCTGTCAGTTAGGGGGAAAAAAATTATTTCCTATCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

9.52

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 3 cut(s) 61, 138, 251
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AoxI GGCC 2 cut(s) 87, 108
ApoI RAATTY 3 cut(s) 61, 138, 251
BalI TGGCCA 1 cut(s) 89
BccI CCATC 2 cut(s) 32, 266
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 43, 258
BseLI CCNNNNNNNGG 1 cut(s) 130
BshFI GGCC 2 cut(s) 89, 110
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 2 cut(s) 89, 110
Bsp143I GATC 2 cut(s) 218, 312
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 89, 110
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 218, 312
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 43, 258
BstKTI GATC 2 cut(s) 221, 315
BstMBI GATC 2 cut(s) 218, 312
BstMWI GCNNNNNNNGC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 89, 110
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 43, 258
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
CviAII CATG 2 cut(s) 46, 91
CviJI RGCY 3 cut(s) 89, 103, 110
CviKI_1 RGCY 3 cut(s) 89, 103, 110
DpnI GATC 2 cut(s) 220, 314
DpnII GATC 2 cut(s) 218, 312
EaeI YGGCCR 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 49, 94
FatI CATG 2 cut(s) 45, 90
FokI GGATG 2 cut(s) 50, 245
HaeIII GGCC 2 cut(s) 89, 110
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 49, 94
HinfI GANTC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 49, 94
Kzo9I GATC 2 cut(s) 218, 312
MaeII ACGT 1 cut(s) 21
MalI GATC 2 cut(s) 220, 314
MboI GATC 2 cut(s) 218, 312
MboII GAAGA 2 cut(s) 16, 191
MfeI CAATTG 2 cut(s) 11, 167
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 9 cut(s) 11, 61, 126, 138, 152, 167, 251, 273, 365
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 5 cut(s) 74, 130, 182, 289, 348
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 27, 272
Msp20I TGGCCA 1 cut(s) 89
MunI CAATTG 2 cut(s) 11, 167
MwoI GCNNNNNNNGC 1 cut(s) 332
NcoI CCATGG 1 cut(s) 90
NdeII GATC 2 cut(s) 218, 312
NlaIII CATG 2 cut(s) 49, 94
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 27, 272
Sau3AI GATC 2 cut(s) 218, 312
SetI ASST 2 cut(s) 24, 122
SgeI CNNG 7 cut(s) 58, 92, 103, 127, 223, 310, 322
Sse9I AATT 9 cut(s) 11, 61, 126, 138, 152, 167, 251, 273, 365
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 79
TasI AATT 9 cut(s) 11, 61, 126, 138, 152, 167, 251, 273, 365
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 27, 272
Tru9I TTAA 2 cut(s) 27, 272
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 17, 34, 192
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 3 cut(s) 61, 138, 251
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.