Rh5DG465400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017775
Physical Location & Seq
Reverse (-)
73957388 .. 73958684
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG465400.1

Sequence Viewer

Length: 180 bp
ATGAAGAATCAATTGGAAGACGTCATTAAGGAGAAGGATGGGTTCATGGTTGAGATTGGGAATTCGTTATCTAATGTTCGAGGAATGGCCATGGAAGGTCAGCCACTGGCCTGCAAGACCTCCCTAATTGTGGCTTATCTTGCTGCTACTGCTACGAGGATTGTTGAAATGCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.41

Weight (kDa)

5.14

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 167
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 87, 108
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 61
BalI TGGCCA 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 32
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 2 cut(s) 89, 110
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 2 cut(s) 89, 110
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 89, 110
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 140, 149
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 89, 110
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 106
CviAII CATG 3 cut(s) 46, 91, 177
CviJI RGCY 4 cut(s) 89, 103, 110, 134
CviKI_1 RGCY 4 cut(s) 89, 103, 110, 134
EaeI YGGCCR 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 49, 94, 180
FaiI YATR 3 cut(s) 47, 92, 178
FatI CATG 3 cut(s) 45, 90, 176
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 89, 110
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 3 cut(s) 49, 94, 180
HinfI GANTC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 28, 89
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 149
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 3 cut(s) 49, 94, 180
LpnPI CCDG 2 cut(s) 92, 124
Lsp1109I GCAGC 1 cut(s) 130
MaeII ACGT 1 cut(s) 21
MboII GAAGA 2 cut(s) 16, 29
MfeI CAATTG 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 11, 61, 126
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 3 cut(s) 74, 130, 150
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 89
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 140, 149
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 3 cut(s) 49, 94, 180
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 144
SetI ASST 3 cut(s) 24, 100, 122
SgeI CNNG 8 cut(s) 58, 92, 103, 119, 123, 127, 152, 168
Sse9I AATT 3 cut(s) 11, 61, 126
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 11, 61, 126
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 17, 34
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 61
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.