Rroxscaffold_1G00028790

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017775
Physical Location & Seq
Forward (+)
36883377 .. 36897969
14593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028790.1

Sequence Viewer

Length: 408 bp
ATGAAGAATCAATTGGACGACGTCATTAAGGAGAAGGATGGGTTCATGGTTGAGATTGGGAATTCGTTATCTAATGTTCAAGGAATGGCCATGGAAGGTCAGCCACTAGCCTGCAAGACCTCCCTAATTGTGTCAGCTTCAAACTTGGACCCTCGTGCTGATAGTACACATAAACGTGGACCTGGTAATACACATGAACCTGAAGCTGATAGTGTAGATGAACATGAACCTGTGATTGACTCGACTCGGTGCATATGGATGATAATATGGCACGGAGAGCTTTCCAAGTCAGCTTCAAACTTGAAGATATTCAAGTGGGAAGGAACTATGAAGACCACATACCTTCAAGAAGAAATCGACGAAGTTCATGACACGTACATCGTATACTATCTTATACTAAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

4.9

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 166, 377
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 6 cut(s) 80, 141, 297, 304, 313, 347
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 137, 206, 280, 293
AluI AGCT 4 cut(s) 137, 206, 280, 293
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 148, 179
AvaII GGWCC 2 cut(s) 148, 179
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 338
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 148, 179
BmgT120I GGNCC 2 cut(s) 148, 179
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 43, 264
BshFI GGCC 1 cut(s) 89
BsnI GGCC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 89
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 90
BssNAI GTATAC 1 cut(s) 385
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 385
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 43, 264
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 43, 264
Cac8I GCNNGC 1 cut(s) 112
CciI TCATGA 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 148, 179
CsiI ACCWGGT 1 cut(s) 181
Csp6I GTAC 2 cut(s) 165, 376
CviAII CATG 5 cut(s) 46, 91, 194, 224, 368
CviJI RGCY 7 cut(s) 89, 103, 110, 137, 206, 280, 293
CviKI_1 RGCY 7 cut(s) 89, 103, 110, 137, 206, 280, 293
CviQI GTAC 2 cut(s) 165, 376
EaeI YGGCCR 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 148, 179
Eco57I CTGAAG 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 49, 94, 197, 227, 371
FatI CATG 5 cut(s) 45, 90, 193, 223, 367
FauNDI CATATG 1 cut(s) 254
FblI GTMKAC 1 cut(s) 384
FokI GGATG 2 cut(s) 50, 271
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 5 cut(s) 49, 94, 197, 227, 371
HinfI GANTC 3 cut(s) 7, 239, 244
Hpy166II GTNNAC 3 cut(s) 167, 179, 385
Hpy188III TCNNGA 2 cut(s) 347, 368
Hpy8I GTNNAC 3 cut(s) 167, 179, 385
Hpy99I CGWCG 2 cut(s) 23, 362
HpyAV CCTTC 4 cut(s) 28, 89, 314, 353
HpyCH4IV ACGT 3 cut(s) 21, 175, 374
HpyCH4V TGCA 2 cut(s) 114, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpySE526I ACGT 3 cut(s) 21, 175, 374
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 5 cut(s) 49, 94, 197, 227, 371
LpnPI CCDG 5 cut(s) 124, 168, 195, 213, 243
MabI ACCWGGT 1 cut(s) 181
MaeI CTAG 1 cut(s) 107
MaeII ACGT 3 cut(s) 21, 175, 374
MboII GAAGA 4 cut(s) 16, 316, 343, 362
MfeI CAATTG 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 11, 61, 126
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 2 cut(s) 233, 238
MnlI CCTC 2 cut(s) 130, 162
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 2 cut(s) 174, 257
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 277
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 254
NlaIII CATG 5 cut(s) 49, 94, 197, 227, 371
NlaIV GGNNCC 1 cut(s) 150
PagI TCATGA 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 233, 238
PpsI GAGTC 2 cut(s) 233, 238
Ppu21I YACGTR 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 148, 179
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 2 cut(s) 166, 377
RsaNI GTAC 2 cut(s) 165, 376
RseI CAYNNNNRTG 2 cut(s) 174, 257
SaqAI TTAA 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 148, 179
SchI GAGTC 2 cut(s) 233, 238
ScrFI CCNGG 1 cut(s) 183
SexAI ACCWGGT 1 cut(s) 181
SinI GGWCC 2 cut(s) 148, 179
SmiMI CAYNNNNRTG 2 cut(s) 174, 257
Sse9I AATT 3 cut(s) 11, 61, 126
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 3 cut(s) 24, 178, 377
TaqI TCGA 2 cut(s) 242, 357
TasI AATT 3 cut(s) 11, 61, 126
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TspDTI ATGAA 7 cut(s) 17, 34, 210, 234, 240, 344, 356
TspGWI ACGGA 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 2 cut(s) 148, 179
XapI RAATTY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 107
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.