Rroxscaffold_7G00195600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017775
Physical Location & Seq
Forward (+)
38081298 .. 38087595
6298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195600.1

Sequence Viewer

Length: 324 bp
ATGGCGGTGAAACCACCGTGCTGCATTTCTCCTGCTTCGATCGACCAAGACCAGGCCAACACGGTCACGGCGAAGCGATCCGGCACTACCGACTTGCAACTTGACGCCGCAATCCAAGTTCGAAGCACCGAGCAAAAGACAAGGCTTTGCAATAGAATGATGAGATTAAGAATCAATGGGATGACTTCGTTACGGGAGAAGGATGGGTTCAAGGCCGAGATTGGGAATTCCACGCATATGCTCATGTACGGGATTGTTAAGATTTCAGGTAAAGTTAGTAATTTTAAGAATTTGGCTACCCGGGGATTGCCGGAGGTCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.79

Weight (kDa)

9.6

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 108
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 2 cut(s) 226, 289
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 52, 222
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 51
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 54, 213
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 2 cut(s) 226, 289
AsuC2I CCSGG 2 cut(s) 301, 302
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 300
BbvI GCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 2 cut(s) 301, 302
BisI GCNGC 2 cut(s) 22, 108
BlsI GCNGC 2 cut(s) 23, 109
Bme1390I CCNGG 3 cut(s) 53, 301, 302
BmeT110I CYCGRG 1 cut(s) 300
BmrFI CCNGG 3 cut(s) 53, 301, 302
Bpu14I TTCGAA 1 cut(s) 121
BpuMI CCSGG 2 cut(s) 301, 302
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 300, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 222
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 300, 301
BseGI GGATG 2 cut(s) 186, 208
BseLI CCNNNNNNNGG 2 cut(s) 52, 222
BseXI GCAGC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 56, 215
BsiEI CGRYCG 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 81, 301, 311
BslI CCNNNNNNNGG 2 cut(s) 52, 222
BsnI GGCC 2 cut(s) 56, 215
BsoBI CYCGRG 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 39, 77
BspACI CCGC 2 cut(s) 5, 108
BspANI GGCC 2 cut(s) 56, 215
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 300, 301
BssMI GATC 2 cut(s) 39, 77
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 18, 64
BstACI GRCGYC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 121
BstF5I GGATG 2 cut(s) 186, 208
BstKTI GATC 2 cut(s) 42, 80
BstMBI GATC 2 cut(s) 39, 77
BstMCI CGRYCG 1 cut(s) 42
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 51, 299, 300
BstV1I GCAGC 1 cut(s) 8
BsuRI GGCC 2 cut(s) 56, 215
BtsCI GGATG 2 cut(s) 186, 208
Cfr9I CCCGGG 1 cut(s) 300
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 56, 145, 215, 296
CviKI_1 RGCY 4 cut(s) 56, 145, 215, 296
CviQI GTAC 1 cut(s) 247
DpnI GATC 2 cut(s) 41, 79
DpnII GATC 2 cut(s) 39, 77
Eco88I CYCGRG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 237, 239, 245
FatI CATG 1 cut(s) 243
FauNDI CATATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 22, 108
FokI GGATG 2 cut(s) 193, 215
Fsp4HI GCNGC 2 cut(s) 22, 108
GluI GCNGC 2 cut(s) 22, 108
HaeIII GGCC 2 cut(s) 56, 215
HapII CCGG 3 cut(s) 81, 301, 311
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 171
HpaII CCGG 3 cut(s) 81, 301, 311
HphI GGTGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 18, 64
HpyCH4V TGCA 3 cut(s) 24, 97, 150
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 39, 77
LpnPI CCDG 6 cut(s) 38, 45, 65, 94, 252, 314
Lsp1109I GCAGC 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 64, 189
MalI GATC 2 cut(s) 41, 79
MboI GATC 2 cut(s) 39, 77
MluCI AATT 3 cut(s) 226, 280, 289
MnlI CCTC 1 cut(s) 307
MseI TTAA 3 cut(s) 167, 258, 285
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 3 cut(s) 81, 301, 311
MspR9I CCNGG 3 cut(s) 53, 301, 302
MvaI CCWGG 1 cut(s) 53
NciI CCSGG 2 cut(s) 301, 302
NdeI CATATG 1 cut(s) 237
NdeII GATC 2 cut(s) 39, 77
NlaIII CATG 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 23, 109
Ple19I CGATCG 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PvuI CGATCG 1 cut(s) 42
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 3 cut(s) 167, 258, 285
SatI GCNGC 2 cut(s) 22, 108
Sau3AI GATC 2 cut(s) 39, 77
ScrFI CCNGG 3 cut(s) 53, 301, 302
SetI ASST 2 cut(s) 271, 318
SfuI TTCGAA 1 cut(s) 121
SmaI CCCGGG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 3 cut(s) 226, 280, 289
SsiI CCGC 2 cut(s) 5, 108
StyD4I CCNGG 3 cut(s) 51, 299, 300
TaaI ACNGT 2 cut(s) 18, 64
TaqI TCGA 4 cut(s) 38, 42, 121, 318
TasI AATT 3 cut(s) 226, 280, 289
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 3 cut(s) 167, 258, 285
Tru9I TTAA 3 cut(s) 167, 258, 285
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 64
TspMI CCCGGG 1 cut(s) 300
XapI RAATTY 2 cut(s) 226, 289
XmaI CCCGGG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.