Rh5BG272100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017775
Physical Location & Seq
Reverse (-)
34101342 .. 34109563
8222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG272100.1

Sequence Viewer

Length: 264 bp
ATGAAGAATCAATTGGACGACGTCATTAAGGAGAAGGATGGGTTCATGGTTGAGATTGGGAATTCGTTATCTAATGTTCGAGGAATGGCCATGGAAGGTCAGCCACTGGCCTGCAAGGCCTCCCTAATTGTGAAGGCTAATGTTGTTGCTGAGAACCTTGCTACACATGCTTTATCAAACCCCGCAGAGAAACATTGGATTGCTAAGCCCCCTACTTTTATCGACTCCTCTTTGGCTATTGAAAAATATGCTTCTTCTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.39

Weight (kDa)

6.05

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 21
AgsI TTSAA 1 cut(s) 242
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 3 cut(s) 87, 108, 117
ApoI RAATTY 1 cut(s) 61
BalI TGGCCA 1 cut(s) 89
BccI CCATC 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 204
Bpu1102I GCTNAGC 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 217
BshFI GGCC 3 cut(s) 89, 110, 119
BsnI GGCC 3 cut(s) 89, 110, 119
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 1 cut(s) 183
BspANI GGCC 3 cut(s) 89, 110, 119
BspCNI CTCAG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 150, 204
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 116, 167
BstNSI RCATGY 1 cut(s) 170
BstSNI TACGTA 1 cut(s) 261
BsuRI GGCC 3 cut(s) 89, 110, 119
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 106
CviAII CATG 3 cut(s) 46, 91, 167
CviJI RGCY 7 cut(s) 89, 103, 110, 119, 137, 208, 236
CviKI_1 RGCY 7 cut(s) 89, 103, 110, 119, 137, 208, 236
DdeI CTNAG 2 cut(s) 150, 204
EaeI YGGCCR 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 49, 94, 170
FaiI YATR 4 cut(s) 47, 92, 168, 249
FatI CATG 3 cut(s) 45, 90, 166
FauI CCCGC 1 cut(s) 190
FokI GGATG 1 cut(s) 50
HaeIII GGCC 3 cut(s) 89, 110, 119
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 3 cut(s) 49, 94, 170
HinfI GANTC 2 cut(s) 7, 224
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 28, 89, 127
HpyCH4IV ACGT 2 cut(s) 21, 260
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 167
HpyF3I CTNAG 2 cut(s) 150, 204
HpySE526I ACGT 2 cut(s) 21, 260
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 3 cut(s) 49, 94, 170
LpnPI CCDG 2 cut(s) 92, 124
MaeII ACGT 2 cut(s) 21, 260
MboII GAAGA 2 cut(s) 16, 246
MfeI CAATTG 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 11, 61, 126
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 74, 130, 238
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 89
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 116, 167
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 3 cut(s) 49, 94, 170
NspI RCATGY 1 cut(s) 170
PceI AGGCCT 1 cut(s) 119
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 27
SchI GAGTC 1 cut(s) 218
SetI ASST 4 cut(s) 24, 100, 159, 263
SfiI GGCCNNNNNGGCC 1 cut(s) 116
SgeI CNNG 9 cut(s) 58, 92, 103, 119, 123, 127, 170, 179, 194
SnaBI TACGTA 1 cut(s) 261
Sse9I AATT 3 cut(s) 11, 61, 126
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 119
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 2 cut(s) 24, 263
TaqI TCGA 2 cut(s) 79, 222
TasI AATT 3 cut(s) 11, 61, 126
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 17, 34
TspRI CASTG 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 20
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 170
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.