Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006908

Physical Location & Seq

Genomic Coordinates Forward (+)

24030138 .. 24034854

Gene Structure 4717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2913 bp

ATGCTAACTTTCTCTTCACCTTACTTGTCATCCGATACATATTATGTCTCTCTTTCATTCTCTACGGCCATTGCTATTTCTGGTTCTCTGCGAATGAGAACTTTCAAAATCCCCACCATTTTTACTTCTAAAAGCCACCCGAGGCTTCCTTACCAAAACCCCATTCGCCAAAATCTAGTAGACAAACCTGAAAGCCAGAATGGCTCCAACAGGGTGTTTAGATTCTTGCGCGGGCTTATGTCCGGAGGGAAAATTGATGGGGGGTCGAGGACAGAGGCAGAGGAGAAGCTTTACTCTTGGTTATACGCCTTGGCGCAATCCGATAAGGATTTGGTTTTCGAGTATGTTCGATCCACCGAAAGAGGATTGAGCTTTACTGAAGCTGAAAGGAGATTGAAGGAAAATGGCCCGAATGTTCCTGTTGATTTCTCTTTTCCTAGCTGGTGGCATTTTTTATGGAGTGCTTTCTTTCATCCTTTTAATATCATATTGATCGTCCTGTCTGTAATCTCGTACATAACCAGCGACAGCCCAAATGGATGCATCATGCTTGTTTTGGTTTTGATAAGTGTTTGCCTCCGGTTCTATCAGGAATACGGAAGTTCAAAAGCAGCCATGGAACTTTCAGAATTTGTAAGGTGCCCAGTCAAAGTTCAAAGATGTGCAGGTAGAGTTGTTCAGACTGAATTAGTAGTACAAATTGATCAAAGAGATATTGTTCCTGGTGATATTATCATATTTGAACCTGGAGACCTTTTTCCTGGAGATGTGAGACTATTGTCTTCGAAACACCTTGTTGTAAGTCAGGCCTCATTAACAGGAGAGTCCTGGACAACCGAAAAAACAGCTGATATCAGAGAGAATCAAAGCACTCCATTGCTAGATTTAAGGAATATTTGCTTCATGGGAACAAATGTAGTATCAGGCAGTGGATCTGGTCTAGTGGTTTCCACTGGATCTAAGACATACATGAGCACCATGTTTTCAAACATAGGGAAGAAGAAACCACCAAATGAATTTGAGGACGGTGTTCGTCGCATATCTTATGTGCTGGTTGCTGTTATGCTAGTAGTAGTCACCATCATAGTTATAACTGACTACTCTACATCTCTTGATCTGTCTGAGAGCATCCTTTTTGGAGTGTCAGTTGCAAGTGCACTTACTCCTCAAATGCTTCCCCTGGTCGTTAACACAAGTCTTGCAAAAGGAGCACTTGCTATGGCCAGAGACAGATGCATAATCAAAAGCTTATCTGCAATACGAAACATGGGTTCTATGGATATCTTATGCATTGACAAGACTGGTACACTCACCATGAATCGTGCGATAATGGTTAATTATCTGGACAGCTGGGGGTTAGACAAAGAAAAGGTTTTACAGTTTGCTTTCCTCAACTCATATTTCAAGACCGATCAGAAATATCCTTTGGATGATGCAATTTTGGCACATGTATATACCAATGGATTCAGGTTCCAACCGTCAAAATGGAAGAAACTAGATGAGATTCCTTTTGATTTCATAAGAAGAAGAGTATCTATTATCATGGAAAGAGAAGAAGACACAGATCCTCACAGTTTTGTGAGAGTCATGGTGACAAAAGGAGCTCTGGAAGAAGTAATGAAAGTTTGTTCTTGTATGGAGAATGTTGACAGTGGCACAATTTCACCTCTCTCTCCAGAACAGTATCAAAGGATTATAAATATGACCGAGGAAATAAGCAATGAGGGACTAAGAGTTATAGGAGTAGCAACAAAGAAGCTGGGAAAGATAAGGTATGAGCGCAAAGATAATGATGATACTTCTGAATCAGACATGGTTTTCCTCGGCCTCATTACATTCTTTGACCCACCCAAGGACTCAGCAAAGCAAGCTCTGTGGCAGTTGGCTGAGAAGGGAGTGAAAGCAAAAGTATTAACAGGTGACTCACTGTCTCTATCTATAAGAGTTTGCAAGGAAGTTGGTATCAGAACAACTCATGTAGTTACGGGGCCAGAGCTTGAGCTACTCGACCAGGATGCCTTTCATGAGACTGTTAAAACAGCAACGGTCTTAGCTCGACTCACCCCAACGCAGAAACTCCGAGTTGTGCAATCCTTGCAAACAATTGGTAACCACATTGTTGGATTTTTGGGAGATGGAGTAAATGACTCGCTTGCACTGGATGCAGCCCATGTTGGTATATCAGTTGATTCAGGAGCATCAGTTGCAAAAGACTTTGCTGACATTATCTTACTGGAGAAAGACCTGAATGTACTCATTGCCGGAGTTGAACATGGACGACTCACTTTTGGGAACACAATGAAGTACATAAAAATGTCAGTTATTGCCAATCTGGGAAGCGTTCTCTCAATTCTCATAGCAACCCTGGTGCTCAAGTATGAGCCATTGACGGCAAGGCAGCTTCTTACACAGAACTTCTTGTATAGTGTGGGCCAGATTGCAATCCCATGGGATAAAATGGAAGATGATTATGTAAAAGTCCCACAAAGATGGTCAAAGAAAGGTTTGCCGACGTTCATTTTGTGGAATGGACCTGTCTGCACTCTTTTTGATGTTACTACACTTCTGTTCCTTTGGTTCTATTATAAGGCTGATAATCTGGAGGATCTTGTTTTCTTCCACACTGCTTGGTTCATCGAAGGGCTTCTCATGCAGACCCTAATCATCCACTTGATCCGTACAGAGAAAATTCCTTTCATTCAGGAGTTTGCCTCATGGCCTGTGCTTTGTTCTACAGTTCTGGTTTCTGCAATTGGAATCGCAATTACATTCACCCCGATTGGGAAAGTGATGGGATTTATCAGGCTTCCACTGTCATACTTTGGGTTTTTGGTAGTACTGTTTATAGGATATTTTGTTGTTGGCCAGGTGGTCAAGAGACTATACATTTTGGTTTATAAAACCTGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098660 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

970

Amino Acids

108.7

Weight (kDa)

7.18

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 171	8.7e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	224 - 328	3.3e-17	P-type ATPase actuator domain
Cation_ATPase	PF13246	493 - 619	9.2e-22	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	592 - 723	3.5e-07	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	795 - 961	7.7e-19	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006908)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20140 FvH4_1g20140 FvH4_1g20140 FvH4_1g20140 FvH4_1g20140 FvH4_1g20140
malus_domestica	MD00G1145700.v1.1 MD15G1317200.v1.1
prunus_persica	Prupe.6G194600_v2.0.a1 Prupe.6G194600_v2.0.a1 Prupe.6G194600_v2.0.a1 Prupe.6G194600_v2.0.a1
pyrus_communis	pycom01g06410
rosa_chinensis	RchiOBHm_Chr2g0112191
rosa_laevigata	RLG00000017957
rosa_multiflora	Rmu_sc0001386.1_g000001 Rmu_sc0026641.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131700
rosa_rugosa	Rorug02G0179000 Rorug02G0179000 Rorug02G0179100
rosa_samantha	Rh2AG231200 Rh2BG244200 Rh2CG235600 Rh2DG239100
rosa_wichuraiana	Rw2G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1091, 1697, 2586, 2898
Acc36I	ACCTGC	1 cut(s)	656
AccB1I	GGYRCC	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	6 cut(s)	345, 940, 964, 1559, 2613, 2668
AcoI	YGGCCR	3 cut(s)	66, 1221, 2863
AcsI	RAATTY	3 cut(s)	629, 1016, 2688
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	7 cut(s)	515, 696, 1306, 2253, 2306, 2680, 2838
AfiI	CCNNNNNNNGG	2 cut(s)	1852, 2781
AflIII	ACRYGT	1 cut(s)	1447
AgsI	TTSAA	8 cut(s)	106, 397, 606, 656, 743, 987, 1405, 2270
AhdI	GACNNNNNGTC	1 cut(s)	1927
AjnI	CCWGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
AjuI	GAANNNNNNNTTGG	4 cut(s)	147, 179, 1409, 1441
Alw21I	GWGCWC	5 cut(s)	977, 1159, 1213, 1606, 2373
Alw26I	GTCTC	7 cut(s)	52, 744, 766, 1221, 1935, 2021, 2872
Alw44I	GTGCAC	1 cut(s)	1155
AlwI	GGATC	6 cut(s)	345, 940, 964, 1559, 2613, 2668
Ama87I	CYCGRG	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	9 cut(s)	66, 406, 807, 1221, 1825, 1988, 2431, 2717, 2863
ApaLI	GTGCAC	1 cut(s)	1155
ApeKI	GCWGC	3 cut(s)	611, 2165, 2398
ApoI	RAATTY	3 cut(s)	629, 1016, 2688
ArsI	GACNNNNNNTTYG	2 cut(s)	2503, 2535
Asp700I	GAANNNNTTC	1 cut(s)	2643
AspLEI	GCGC	3 cut(s)	231, 316, 1782
AspS9I	GGNCC	4 cut(s)	407, 1988, 2431, 2531
AsuHPI	GGTGA	9 cut(s)	9, 737, 1069, 1303, 1603, 1656, 1931, 2053, 2764
AsuII	TTCGAA	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	2531
BaeGI	GKGCMC	2 cut(s)	644, 1159
BalI	TGGCCA	2 cut(s)	1223, 2865
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	1606
BbsI	GAAGAC	2 cut(s)	774, 1563
Bbv12I	GWGCWC	5 cut(s)	977, 1159, 1213, 1606, 2373
BbvI	GCAGC	3 cut(s)	623, 2177, 2410
BccI	CCATC	5 cut(s)	251, 1088, 2129, 2484, 2785
BceAI	ACGGC	2 cut(s)	81, 2406
BcgI	CGANNNNNNTGC	2 cut(s)	1997, 2031
BciT130I	CCWGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
BclI	TGATCA	1 cut(s)	703
BcoDI	GTCTC	7 cut(s)	52, 744, 766, 1221, 1935, 2021, 2872
BfaI	CTAG	6 cut(s)	176, 438, 881, 941, 1067, 1496
BfmI	CTRYAG	1 cut(s)	2733
BfuAI	ACCTGC	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	612, 2166, 2399
BlsI	GCNGC	3 cut(s)	613, 2167, 2400
BmcAI	AGTACT	1 cut(s)	2838
Bme1390I	CCNGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
Bme18I	GGWCC	1 cut(s)	2531
BmeRI	GACNNNNNGTC	1 cut(s)	1927
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	407, 1988, 2431, 2531
BmiI	GGNNCC	4 cut(s)	205, 641, 1472, 1989
BmrFI	CCNGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	8 cut(s)	530, 552, 1137, 1223, 1423, 2005, 2152, 2207
BmuI	ACTGGG	1 cut(s)	638
BoxI	GACNNNNGTC	1 cut(s)	778
BpiI	GAAGAC	2 cut(s)	774, 1563
BplI	GAGNNNNNCTC	2 cut(s)	2696, 2728
BpmI	CTGGAG	5 cut(s)	768, 783, 1659, 2255, 2621
Bpu14I	TTCGAA	1 cut(s)	785
BpuEI	CTTGAG	2 cut(s)	2018, 2357
BsaBI	GATNNNNATC	1 cut(s)	2441
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	9 cut(s)	140, 309, 615, 1179, 1707, 1822, 1851, 2364, 2447
BsaWI	WCCGGW	2 cut(s)	242, 579
BsaXI	ACNNNNNCTCC	6 cut(s)	1131, 1161, 2124, 2154, 2187, 2217
Bsc4I	CCNNNNNNNGG	2 cut(s)	1852, 2781
Bse1I	ACTGG	5 cut(s)	644, 958, 1306, 2163, 2238
Bse3DI	GCAATG	4 cut(s)	69, 875, 1726, 2256
Bse8I	GATNNNNATC	1 cut(s)	2441
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
BseDI	CCNNGG	9 cut(s)	140, 309, 615, 1179, 1707, 1822, 1851, 2364, 2447
BseGI	GGATG	8 cut(s)	29, 472, 545, 1128, 1435, 2020, 2167, 2664
BseJI	GATNNNNATC	1 cut(s)	2441
BseLI	CCNNNNNNNGG	2 cut(s)	1852, 2781
BseMI	GCAATG	4 cut(s)	69, 875, 1726, 2256
BseMII	CTCAG	3 cut(s)	1113, 1872, 1878
BseNI	ACTGG	5 cut(s)	644, 958, 1306, 2163, 2238
BseRI	GAGGAG	2 cut(s)	296, 1155
BseSI	GKGCMC	2 cut(s)	644, 1159
BseXI	GCAGC	3 cut(s)	623, 2177, 2410
BseYI	CCCAGC	2 cut(s)	1350, 1759
BsgI	GTGCAG	2 cut(s)	684, 2524
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	9 cut(s)	68, 408, 809, 1223, 1827, 1990, 2433, 2719, 2865
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	5 cut(s)	977, 1159, 1213, 1606, 2373
BsiHKCI	CYCGRG	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	243, 580, 2262
BslFI	GGGAC	2 cut(s)	1740, 2465
BslI	CCNNNNNNNGG	2 cut(s)	1852, 2781
BsmAI	GTCTC	7 cut(s)	52, 744, 766, 1221, 1935, 2021, 2872
BsmFI	GGGAC	2 cut(s)	1740, 2465
BsnI	GGCC	9 cut(s)	68, 408, 809, 1223, 1827, 1990, 2433, 2719, 2865
Bso31I	GGTCTC	1 cut(s)	744
BsoBI	CYCGRG	1 cut(s)	139
Bsp119I	TTCGAA	1 cut(s)	785
Bsp1286I	GDGCHC	6 cut(s)	644, 977, 1159, 1213, 1606, 2373
Bsp13I	TCCGGA	1 cut(s)	242
Bsp19I	CCATGG	2 cut(s)	615, 2447
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	9 cut(s)	68, 408, 809, 1223, 1827, 1990, 2433, 2719, 2865
BspCNI	CTCAG	3 cut(s)	1114, 1871, 1879
BspEI	TCCGGA	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	2023
BspLI	GGNNCC	4 cut(s)	205, 641, 1472, 1989
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	6 cut(s)	345, 940, 964, 1559, 2613, 2668
BspT104I	TTCGAA	1 cut(s)	785
BspT107I	GGYRCC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	744
BsrDI	GCAATG	4 cut(s)	69, 875, 1726, 2256
BsrI	ACTGG	5 cut(s)	644, 958, 1306, 2163, 2238
BssECI	CCNNGG	9 cut(s)	140, 309, 615, 1179, 1707, 1822, 1851, 2364, 2447
BssT1I	CCWWGG	4 cut(s)	309, 615, 1851, 2447
Bst2UI	CCWGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
Bst6I	CTCTTC	2 cut(s)	19, 1522
BstAPI	GCANNNNNTGC	3 cut(s)	2095, 2162, 2204
BstBI	TTCGAA	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	233, 1869, 2154
BstDEI	CTNAG	6 cut(s)	960, 1122, 1730, 1858, 1887, 2050
BstDSI	CCRYGG	2 cut(s)	615, 2447
BstEII	GGTNACC	1 cut(s)	2108
BstF5I	GGATG	8 cut(s)	29, 472, 545, 1128, 1435, 2020, 2167, 2664
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	231, 316, 1782
BstMAI	GTCTC	7 cut(s)	52, 744, 766, 1221, 1935, 2021, 2872
BstMWI	GCNNNNNNNGC	8 cut(s)	201, 1208, 1442, 1868, 2095, 2162, 2204, 2650
BstNI	CCWGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
BstNSI	RCATGY	1 cut(s)	1451
BstPAI	GACNNNNGTC	1 cut(s)	778
BstPI	GGTNACC	1 cut(s)	2108
BstSCI	CCNGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
BstSFI	CTRYAG	1 cut(s)	2733
BstSLI	GKGCMC	2 cut(s)	644, 1159
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	623, 2177, 2410
BstV2I	GAAGAC	2 cut(s)	774, 1563
BstX2I	RGATCY	4 cut(s)	932, 956, 1564, 2605
BstXI	CCANNNNNNTGG	2 cut(s)	2120, 2490
BstYI	RGATCY	4 cut(s)	932, 956, 1564, 2605
BsuRI	GGCC	9 cut(s)	68, 408, 809, 1223, 1827, 1990, 2433, 2719, 2865
BtgI	CCRYGG	2 cut(s)	615, 2447
BtsCI	GGATG	8 cut(s)	29, 472, 545, 1128, 1435, 2020, 2167, 2664
BtsI	GCAGTG	2 cut(s)	934, 2622
BtsIMutI	CAGTG	7 cut(s)	934, 951, 1657, 1925, 2156, 2622, 2810
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	3 cut(s)	233, 1869, 2154
CciI	TCATGA	1 cut(s)	2023
CfoI	GCGC	3 cut(s)	231, 316, 1782
Cfr13I	GGNCC	4 cut(s)	407, 1988, 2431, 2531
Csp6I	GTAC	7 cut(s)	514, 695, 1305, 2252, 2305, 2679, 2837
CspCI	CAANNNNNGTGG	4 cut(s)	1856, 1891, 2609, 2644
CviQI	GTAC	7 cut(s)	514, 695, 1305, 2252, 2305, 2679, 2837
DdeI	CTNAG	6 cut(s)	960, 1122, 1730, 1858, 1887, 2050
DriI	GACNNNNNGTC	1 cut(s)	1927
EaeI	YGGCCR	3 cut(s)	66, 1221, 2863
Eam1104I	CTCTTC	2 cut(s)	19, 1522
Eam1105I	GACNNNNNGTC	1 cut(s)	1927
EarI	CTCTTC	2 cut(s)	19, 1522
Ecl136II	GAGCTC	1 cut(s)	1604
Eco130I	CCWWGG	4 cut(s)	309, 615, 1851, 2447
Eco147I	AGGCCT	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	1606
Eco31I	GGTCTC	1 cut(s)	744
Eco32I	GATATC	2 cut(s)	853, 1282
Eco47I	GGWCC	1 cut(s)	2531
Eco53kI	GAGCTC	1 cut(s)	1604
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	2108
EcoICRI	GAGCTC	1 cut(s)	1604
EcoO65I	GGTNACC	1 cut(s)	2108
EcoRII	CCWGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
EcoRV	GATATC	2 cut(s)	853, 1282
EcoT14I	CCWWGG	4 cut(s)	309, 615, 1851, 2447
EcoT22I	ATGCAT	3 cut(s)	545, 1238, 1292
EcoT38I	GRGCYC	1 cut(s)	1606
ErhI	CCWWGG	4 cut(s)	309, 615, 1851, 2447
FalI	AAGNNNNNCTT	2 cut(s)	1197, 1229
FaqI	GGGAC	2 cut(s)	1740, 2465
FauI	CCCGC	1 cut(s)	224
FbaI	TGATCA	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	612, 2166, 2399
FokI	GGATG	8 cut(s)	16, 459, 552, 1115, 1442, 2027, 2174, 2651
FriOI	GRGCYC	1 cut(s)	1606
Fsp4HI	GCNGC	3 cut(s)	612, 2166, 2399
FspBI	CTAG	6 cut(s)	176, 438, 881, 941, 1067, 1496
GlaI	GCGC	3 cut(s)	230, 315, 1781
GluI	GCNGC	3 cut(s)	612, 2166, 2399
GsaI	CCCAGC	2 cut(s)	1354, 1763
GsuI	CTGGAG	5 cut(s)	768, 783, 1659, 2255, 2621
HaeIII	GGCC	9 cut(s)	68, 408, 809, 1223, 1827, 1990, 2433, 2719, 2865
HapII	CCGG	3 cut(s)	243, 580, 2262
HhaI	GCGC	3 cut(s)	231, 316, 1782
Hin6I	GCGC	3 cut(s)	229, 314, 1780
HinP1I	GCGC	3 cut(s)	229, 314, 1780
HincII	GTYRAC	2 cut(s)	1189, 1648
HindII	GTYRAC	2 cut(s)	1189, 1648
HindIII	AAGCTT	2 cut(s)	287, 1246
HpaI	GTTAAC	1 cut(s)	1189
HpaII	CCGG	3 cut(s)	243, 580, 2262
HphI	GGTGA	9 cut(s)	9, 737, 1069, 1303, 1603, 1656, 1931, 2053, 2764
Hpy166II	GTNNAC	5 cut(s)	181, 1157, 1189, 1307, 1648
Hpy8I	GTNNAC	5 cut(s)	181, 1157, 1189, 1307, 1648
Hpy99I	CGWCG	2 cut(s)	1038, 2515
HpyAV	CCTTC	3 cut(s)	391, 1885, 2633
HpyCH4IV	ACGT	1 cut(s)	2513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	201, 1208, 1442, 1868, 2095, 2162, 2204, 2650
HpyF3I	CTNAG	6 cut(s)	960, 1122, 1730, 1858, 1887, 2050
HpySE526I	ACGT	1 cut(s)	2513
HspAI	GCGC	3 cut(s)	229, 314, 1780
Kpn2I	TCCGGA	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	703
KspAI	GTTAAC	1 cut(s)	1189
LmnI	GCTCC	4 cut(s)	209, 1208, 1601, 2195
Lsp1109I	GCAGC	3 cut(s)	623, 2177, 2410
LweI	GCATC	8 cut(s)	530, 552, 1137, 1223, 1423, 2005, 2152, 2207
MaeI	CTAG	6 cut(s)	176, 438, 881, 941, 1067, 1496
MaeII	ACGT	1 cut(s)	2513
MaeIII	GTNAC	6 cut(s)	1075, 1591, 1919, 1981, 2108, 2554
MfeI	CAATTG	2 cut(s)	2103, 2751
MflI	RGATCY	4 cut(s)	932, 956, 1564, 2605
MhlI	GDGCHC	6 cut(s)	644, 977, 1159, 1213, 1606, 2373
MlsI	TGGCCA	2 cut(s)	1223, 2865
MluNI	TGGCCA	2 cut(s)	1223, 2865
MlyI	GAGTC	7 cut(s)	833, 1593, 1850, 1916, 2052, 2141, 2274
MmeI	TCCRAC	3 cut(s)	231, 1498, 2101
Mox20I	TGGCCA	2 cut(s)	1223, 2865
Mph1103I	ATGCAT	3 cut(s)	545, 1238, 1292
MroI	TCCGGA	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	2643
MscI	TGGCCA	2 cut(s)	1223, 2865
MseI	TTAA	7 cut(s)	480, 815, 887, 1188, 1335, 1913, 2034
MslI	CAYNNNNRTG	2 cut(s)	2312, 2488
Msp20I	TGGCCA	2 cut(s)	1223, 2865
MspA1I	CMGCKG	2 cut(s)	848, 1350
MspI	CCGG	3 cut(s)	243, 580, 2262
MspR9I	CCNGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
MunI	CAATTG	2 cut(s)	2103, 2751
MvaI	CCWGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	8 cut(s)	201, 1208, 1442, 1868, 2095, 2162, 2204, 2650
NcoI	CCATGG	2 cut(s)	615, 2447
NlaIV	GGNNCC	4 cut(s)	205, 641, 1472, 1989
NmeAIII	GCCGAG	1 cut(s)	1803
NmuCI	GTSAC	3 cut(s)	1075, 1591, 1919
NsiI	ATGCAT	3 cut(s)	545, 1238, 1292
NspI	RCATGY	1 cut(s)	1451
NspV	TTCGAA	1 cut(s)	785
PagI	TCATGA	1 cut(s)	2023
PceI	AGGCCT	1 cut(s)	809
PciI	ACATGT	1 cut(s)	1447
PdmI	GAANNNNTTC	1 cut(s)	2643
PfeI	GAWTC	8 cut(s)	222, 862, 1318, 1464, 1504, 1805, 2189, 2757
PfoI	TCCNGGA	2 cut(s)	760, 827
PkrI	GCNGC	3 cut(s)	613, 2167, 2400
PleI	GAGTC	7 cut(s)	832, 1592, 1850, 1916, 2052, 2141, 2274
PpsI	GAGTC	7 cut(s)	832, 1592, 1850, 1916, 2052, 2141, 2274
PscI	ACATGT	1 cut(s)	1447
PshAI	GACNNNNGTC	1 cut(s)	778
PsiI	TTATAA	4 cut(s)	1091, 1697, 2586, 2898
Psp124BI	GAGCTC	1 cut(s)	1606
Psp6I	CCWGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
PspEI	GGTNACC	1 cut(s)	2108
PspFI	CCCAGC	2 cut(s)	1350, 1759
PspGI	CCWGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
PspN4I	GGNNCC	4 cut(s)	205, 641, 1472, 1989
PspPI	GGNCC	4 cut(s)	407, 1988, 2431, 2531
PsuI	RGATCY	4 cut(s)	932, 956, 1564, 2605
PvuII	CAGCTG	2 cut(s)	848, 1350
RsaI	GTAC	7 cut(s)	515, 696, 1306, 2253, 2306, 2680, 2838
RsaNI	GTAC	7 cut(s)	514, 695, 1305, 2252, 2305, 2679, 2837
RseI	CAYNNNNRTG	2 cut(s)	2312, 2488
SacI	GAGCTC	1 cut(s)	1606
SaqAI	TTAA	7 cut(s)	480, 815, 887, 1188, 1335, 1913, 2034
SatI	GCNGC	3 cut(s)	612, 2166, 2399
Sau96I	GGNCC	4 cut(s)	407, 1988, 2431, 2531
ScaI	AGTACT	1 cut(s)	2838
SchI	GAGTC	7 cut(s)	833, 1593, 1850, 1916, 2052, 2141, 2274
ScrFI	CCNGG	9 cut(s)	723, 747, 762, 829, 1181, 2012, 2366, 2867, 2905
SduI	GDGCHC	6 cut(s)	644, 977, 1159, 1213, 1606, 2373
SfaNI	GCATC	8 cut(s)	530, 552, 1137, 1223, 1423, 2005, 2152, 2207
SfcI	CTRYAG	1 cut(s)	2733
SfuI	TTCGAA	1 cut(s)	785
SinI	GGWCC	1 cut(s)	2531
SmiMI	CAYNNNNRTG	2 cut(s)	2312, 2488
SmlI	CTYRAG	2 cut(s)	1997, 2372
SmoI	CTYRAG	2 cut(s)	1997, 2372
SseBI	AGGCCT	1 cut(s)	809
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	6 cut(s)	176, 438, 881, 941, 1067, 1496
SstI	GAGCTC	1 cut(s)	1606
StuI	AGGCCT	1 cut(s)	809
StyD4I	CCNGG	9 cut(s)	721, 745, 760, 827, 1179, 2010, 2364, 2865, 2903
StyI	CCWWGG	4 cut(s)	309, 615, 1851, 2447
TaiI	ACGT	1 cut(s)	2516
TaqI	TCGA	7 cut(s)	266, 339, 349, 785, 2007, 2056, 2637
TaqII	GACCGA	2 cut(s)	1424, 1721
TatI	WGTACW	4 cut(s)	694, 2251, 2304, 2836
TfiI	GAWTC	8 cut(s)	222, 862, 1318, 1464, 1504, 1805, 2189, 2757
Tru1I	TTAA	7 cut(s)	480, 815, 887, 1188, 1335, 1913, 2034
Tru9I	TTAA	7 cut(s)	480, 815, 887, 1188, 1335, 1913, 2034
TscAI	CASTG	7 cut(s)	934, 958, 1657, 1932, 2163, 2629, 2817
TseFI	GTSAC	3 cut(s)	1075, 1591, 1919
TseI	GCWGC	3 cut(s)	611, 2165, 2398
Tsp45I	GTSAC	3 cut(s)	1075, 1591, 1919
TspGWI	ACGGA	2 cut(s)	612, 2666
TspRI	CASTG	7 cut(s)	934, 958, 1657, 1932, 2163, 2629, 2817
VneI	GTGCAC	1 cut(s)	1155
VpaK11BI	GGWCC	1 cut(s)	2531
XapI	RAATTY	3 cut(s)	629, 1016, 2688
XceI	RCATGY	1 cut(s)	1451
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	2643
XspI	CTAG	6 cut(s)	176, 438, 881, 941, 1067, 1496
ZrmI	AGTACT	1 cut(s)	2838
Zsp2I	ATGCAT	3 cut(s)	545, 1238, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.