RchiOBHm_Chr2g0116711

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018565
Physical Location & Seq
Forward (+)
28982423 .. 28983525
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48973

Sequence Viewer

Length: 411 bp
ATGGTTATCATATCTCATGGCCAAGCTTTTCTTGATCAATTGTGTACAAAAATAGTGGAAACTGATATGGGTGTCTCCAGGACGTATGAGGGAAGTTATTCTGAGTATTATATCGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGCGAGAAGCAGCAGAAGGAAATTGAACACACAAAAGACTTGATACACAGGTTGGGCGCTGGAGCAAATTCTGGCAGTGCGTCTTCTGCTGGAAAGGTACGCACGCCTTGCCTTCTCAAGTTCATGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGTGGAGGCAATAAATGTGTACAAAGGCACTGTTATCACAGTTTCTCATGACGATACTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

136

Amino Acids

14.94

Weight (kDa)

5.68

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 19 - 79 1.9e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 3 cut(s) 46, 249, 368
AgsI TTSAA 3 cut(s) 134, 176, 336
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 122, 146, 160
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 209
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BalI TGGCCA 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 133, 134, 172
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 3 cut(s) 123, 147, 161
BlsI GCNGC 3 cut(s) 124, 148, 162
Bme1390I CCNGG 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 61, 231
BpuEI CTTGAG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 133, 134, 172
BshFI GGCC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 21
Bsp1407I TGTACA 2 cut(s) 44, 366
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 394
BsrGI TGTACA 2 cut(s) 44, 366
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 379, 388
BstAPI GCANNNNNTGC 1 cut(s) 258
BstAUI TGTACA 2 cut(s) 44, 366
BstC8I GCNNGC 2 cut(s) 151, 254
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 122, 236, 258
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 133, 134, 172
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 375
Cac8I GCNNGC 2 cut(s) 151, 254
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 209
CseI GACGC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 45, 248, 367
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 4 cut(s) 17, 126, 274, 395
CviJI RGCY 3 cut(s) 21, 26, 283
CviKI_1 RGCY 3 cut(s) 21, 26, 283
CviQI GTAC 3 cut(s) 45, 248, 367
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 77
FaeI CATG 4 cut(s) 20, 129, 277, 398
FaiI YATR 9 cut(s) 11, 18, 68, 87, 111, 127, 275, 396, 409
FalI AAGNNNNNCTT 4 cut(s) 15, 47, 330, 362
FatI CATG 4 cut(s) 16, 125, 273, 394
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 123, 147, 161
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 123, 147, 161
FspBI CTAG 1 cut(s) 296
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 123, 147, 161
GsuI CTGGAG 2 cut(s) 61, 231
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 21
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 209
Hin1II CATG 4 cut(s) 20, 129, 277, 398
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 45, 367
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 32, 302, 395
Hpy8I GTNNAC 2 cut(s) 45, 367
HpyAV CCTTC 3 cut(s) 160, 272, 342
HpyCH4III ACNGT 2 cut(s) 379, 388
HpyCH4IV ACGT 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 236, 258
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 20, 129, 277, 398
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 64, 91, 184, 195, 207, 225, 287
Lsp1109I GCAGC 3 cut(s) 133, 134, 172
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 83
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 225
MfeI CAATTG 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 3 cut(s) 38, 171, 217
MluNI TGGCCA 1 cut(s) 21
MnlI CCTC 2 cut(s) 82, 346
Mox20I TGGCCA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 97
MscI TGGCCA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 122, 236, 258
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 20, 129, 277, 398
PagI TCATGA 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 3 cut(s) 124, 148, 162
PsiI TTATAA 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
RsaI GTAC 3 cut(s) 46, 249, 368
RsaNI GTAC 3 cut(s) 45, 248, 367
SatI GCNGC 3 cut(s) 123, 147, 161
Sau3AI GATC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 79
SetI ASST 4 cut(s) 28, 86, 203, 249
SfaNI GCATC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 38, 171, 217
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 379, 388
TaiI ACGT 1 cut(s) 86
TasI AATT 3 cut(s) 38, 171, 217
TatI WGTACW 2 cut(s) 44, 366
TscAI CASTG 2 cut(s) 232, 382
TseI GCWGC 3 cut(s) 122, 146, 160
TspDTI ATGAA 2 cut(s) 262, 321
TspRI CASTG 2 cut(s) 232, 382
XapI RAATTY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.