Rw2G020780

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018565
Physical Location & Seq
Forward (+)
28432798 .. 28434631
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020780.1

Sequence Viewer

Length: 483 bp
ATGGGTGTCTCCAGGACGTATGAGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGCGAGAAGCAGCAGAAGGAAATTGAACACACAAAAGACTTGATACACGGGTTGGGCGCTGGAGCAAATTCTGGCCGTGCGTCTTCTGCTGGAAAGGCACGCCTTGCCTTCTGCAAGTTCATGGTAAAGCCATCTACTCCGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGTGATGCTTGAGTACTATTTAGAGAAGAATCTAGATGCTAGCGAAAGAGAGCTCGAGCGTGAGGAAGAGATTGAAGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCAGCAAGCAAAGGCAAAATCGAAAGGAACAAAGAACGCTAAGAGATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

9.36

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 2 - 59 5.7e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 284
AgsI TTSAA 4 cut(s) 68, 110, 267, 344
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 2 cut(s) 322, 401
AluI AGCT 2 cut(s) 322, 401
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 56, 80, 94
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 323
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 67, 68, 106
BccI CCATC 2 cut(s) 223, 468
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 227, 302, 309
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 3 cut(s) 57, 81, 95
BlsI GCNGC 3 cut(s) 58, 82, 96
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 3 cut(s) 264, 295, 408
BmtI GCTAGC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 67, 68, 106
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 324
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 354
BspOI GCTAGC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 330, 339
BstAPI GCANNNNNTGC 2 cut(s) 188, 418
BstC8I GCNNGC 5 cut(s) 85, 184, 310, 423, 435
BstDEI CTNAG 3 cut(s) 36, 384, 468
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 5 cut(s) 56, 170, 179, 188, 418
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 67, 68, 106
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 5 cut(s) 85, 184, 310, 423, 435
CfoI GCGC 1 cut(s) 143
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 60, 205
CviJI RGCY 7 cut(s) 159, 214, 322, 353, 368, 389, 401
CviKI_1 RGCY 7 cut(s) 159, 214, 322, 353, 368, 389, 401
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 36, 384, 468
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 330, 339
EarI CTCTTC 2 cut(s) 330, 339
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 2 cut(s) 63, 208
FaiI YATR 4 cut(s) 21, 45, 61, 206
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 59, 204
Fnu4HI GCNGC 3 cut(s) 57, 81, 95
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 57, 81, 95
FspBI CTAG 3 cut(s) 227, 302, 309
GlaI GCGC 1 cut(s) 142
GluI GCNGC 3 cut(s) 57, 81, 95
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 63, 208
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 37, 405
Hpy188III TCNNGA 2 cut(s) 233, 302
HpyAV CCTTC 4 cut(s) 94, 202, 273, 343
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 50, 198, 421
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 170, 179, 188, 418
HpyF3I CTNAG 3 cut(s) 36, 384, 468
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 63, 208
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 146, 358
LpnPI CCDG 7 cut(s) 25, 129, 141, 159, 218, 407, 443
Lsp1109I GCAGC 3 cut(s) 67, 68, 106
LweI GCATC 3 cut(s) 264, 295, 408
MaeI CTAG 3 cut(s) 227, 302, 309
MaeII ACGT 1 cut(s) 17
MboII GAAGA 5 cut(s) 159, 307, 347, 356, 418
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 4 cut(s) 28, 105, 151, 478
MnlI CCTC 2 cut(s) 16, 325
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 56, 170, 179, 188, 418
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 63, 208
NlaIV GGNNCC 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 323
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 3 cut(s) 58, 82, 96
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 354
PspXI VCTCGAGB 1 cut(s) 323
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 3 cut(s) 57, 81, 95
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 324
SetI ASST 3 cut(s) 20, 324, 403
SfaNI GCATC 3 cut(s) 264, 295, 408
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 2 cut(s) 278, 323
SmoI CTYRAG 2 cut(s) 278, 323
Sse9I AATT 4 cut(s) 28, 105, 151, 478
SsiI CCGC 1 cut(s) 224
SspMI CTAG 3 cut(s) 227, 302, 309
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 324, 449
TasI AATT 4 cut(s) 28, 105, 151, 478
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TseI GCWGC 3 cut(s) 56, 80, 94
TspDTI ATGAA 2 cut(s) 193, 252
XapI RAATTY 1 cut(s) 151
XbaI TCTAGA 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 3 cut(s) 227, 302, 309
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.