Rroxscaffold_7G00160560

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018565
Physical Location & Seq
Forward (+)
3524025 .. 3526410
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160560.1

Sequence Viewer

Length: 453 bp
ATGTGCGCGCCAATGGTTATCATATCTCATGACCGAGCTTTTCTTGATCAATTGTGTACAAAAATAGTGGAAACCGATATGGGTGTCTCCGTAACGTATGAGGGAAATTATTCTGAGTATTGTATTGCAAAAGCAGCATGGATTGAAAGTCAAAATGCTCCTTGGGAGAAGCAGCAAAAGAAAATTGAGCACACAAAAGACTTGATTAGCATTGAGTTTTGTTGTTTCACTTTCTCGGGAAGCTGGAGAAACTTCGGGAAGAGGATCTTGTTGAAAGGCCGTTCAAGAGGAAACAGATCAGGATCAGGTTTCCTGAATGGGGAAGAAGTGGGTGATTTGCTCCATTTGGAGATAAGGTGGGTTTACATATTTTGTTCACAAGTAAAAGTGCTACAAGCCATTTTTTTTTTTCACCTTAGAAAGATCTATTCATCTGCAAATTATGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

150

Amino Acids

17.37

Weight (kDa)

8.52

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 23 - 69 2.1e-10 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AclWI GGATC 2 cut(s) 272, 310
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 3 cut(s) 146, 274, 285
AluBI AGCT 2 cut(s) 38, 243
AluI AGCT 2 cut(s) 38, 243
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 2 cut(s) 272, 310
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 2 cut(s) 134, 172
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 8, 10
AsuHPI GGTGA 2 cut(s) 344, 404
AvaI CYCGRG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 146, 184
BceAI ACGGC 1 cut(s) 264
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 91
BglII AGATCT 1 cut(s) 423
BisI GCNGC 2 cut(s) 135, 173
BlsI GCNGC 2 cut(s) 136, 174
BmeT110I CYCGRG 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 105
BsePI GCGCGC 1 cut(s) 6
BseXI GCAGC 2 cut(s) 146, 184
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 56
Bsp143I GATC 5 cut(s) 46, 264, 296, 302, 423
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 28
BspPI GGATC 2 cut(s) 272, 310
BsrGI TGTACA 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 161
BssHII GCGCGC 1 cut(s) 6
BssMI GATC 5 cut(s) 46, 264, 296, 302, 423
BssT1I CCWWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 114, 416
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 2 cut(s) 8, 10
BstKTI GATC 5 cut(s) 49, 267, 299, 305, 426
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 5 cut(s) 46, 264, 296, 302, 423
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 146, 184
BstX2I RGATCY 2 cut(s) 264, 423
BstYI RGATCY 2 cut(s) 264, 423
BsuRI GGCC 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 28
CfoI GCGC 2 cut(s) 8, 10
Csp6I GTAC 1 cut(s) 57
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 29, 138
CviJI RGCY 4 cut(s) 38, 243, 279, 398
CviKI_1 RGCY 4 cut(s) 38, 243, 279, 398
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 114, 416
DpnI GATC 5 cut(s) 48, 266, 298, 304, 425
DpnII GATC 5 cut(s) 46, 264, 296, 302, 423
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 32, 141
FaiI YATR 7 cut(s) 23, 30, 80, 99, 139, 368, 444
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 2 cut(s) 28, 137
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 135, 173
Fsp4HI GCNGC 2 cut(s) 135, 173
GlaI GCGC 2 cut(s) 7, 9
GluI GCNGC 2 cut(s) 135, 173
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 279
HhaI GCGC 2 cut(s) 8, 10
Hin1II CATG 2 cut(s) 32, 141
Hin6I GCGC 2 cut(s) 6, 8
HinP1I GCGC 2 cut(s) 6, 8
HphI GGTGA 2 cut(s) 344, 404
Hpy166II GTNNAC 3 cut(s) 57, 364, 377
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 7 cut(s) 29, 44, 237, 256, 285, 300, 313
Hpy8I GTNNAC 3 cut(s) 57, 364, 377
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 128, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 114, 416
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 32, 141
HspAI GCGC 2 cut(s) 6, 8
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 46, 264, 296, 302, 423
LmnI GCTCC 2 cut(s) 163, 345
LpnPI CCDG 4 cut(s) 229, 285, 291, 326
Lsp1109I GCAGC 2 cut(s) 146, 184
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 48, 266, 298, 304, 425
MboI GATC 5 cut(s) 46, 264, 296, 302, 423
MboII GAAGA 2 cut(s) 271, 335
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 2 cut(s) 264, 423
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 4 cut(s) 50, 106, 183, 439
MnlI CCTC 3 cut(s) 94, 255, 281
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 1 cut(s) 451
MunI CAATTG 1 cut(s) 50
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 5 cut(s) 46, 264, 296, 302, 423
NlaIII CATG 2 cut(s) 32, 141
PagI TCATGA 1 cut(s) 28
PauI GCGCGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 136, 174
PsuI RGATCY 2 cut(s) 264, 423
PteI GCGCGC 1 cut(s) 6
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 2 cut(s) 135, 173
Sau3AI GATC 5 cut(s) 46, 264, 296, 302, 423
SduI GDGCHC 1 cut(s) 192
SetI ASST 6 cut(s) 40, 98, 245, 310, 359, 417
Sse9I AATT 4 cut(s) 50, 106, 183, 439
StyI CCWWGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 98
TaqII GACCGA 1 cut(s) 48
TasI AATT 4 cut(s) 50, 106, 183, 439
TatI WGTACW 1 cut(s) 56
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseI GCWGC 2 cut(s) 134, 172
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.