Rh2BG278400

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018565
Physical Location & Seq
Reverse (-)
30360618 .. 30365555
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG278400.1

Sequence Viewer

Length: 525 bp
ATGGGTGTCTCCTGGACGTATGAGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGGGAGAAGCAGCAGAAGGAAATTGAGCTCACACAAGACTTGATACACAAGTTGGGCGCTGGAGCAAATTCTAGCGGTGTGTTTTCTGCTGGAAAGGCACGCCTTGCCTTCTGCAAGTTCATGGTAAAACCATCTGCTCTGCTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGCGGAGGCAATAAATGTGTACAAAGGCAATTACAATTATTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCGAGTGTGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCATTCCAGCAAGCAAAGGCAAAATCGAACGGAATTACAAAGAATGCTAAGAGATGGAATTAAAGTAGTTTATTTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

174

Amino Acids

19.99

Weight (kDa)

8.68

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 3 - 52 1.7e-11 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 159, 281
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 2 cut(s) 68, 267
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 112, 355, 434
AluI AGCT 3 cut(s) 112, 355, 434
Alw21I GWGCWC 2 cut(s) 114, 357
Alw26I GTCTC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 56, 80, 94
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BanII GRGCYC 2 cut(s) 114, 357
Bbv12I GWGCWC 2 cut(s) 114, 357
BbvI GCAGC 3 cut(s) 67, 68, 106
BccI CCATC 2 cut(s) 223, 491
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 5 cut(s) 156, 227, 323, 335, 342
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 3 cut(s) 57, 81, 95
BlsI GCNGC 3 cut(s) 58, 82, 96
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 264, 328
BpmI CTGGAG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 519
BseBI CCWGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 67, 68, 106
BsiHKAI GWGCWC 2 cut(s) 114, 357
BsiHKCI CYCGRG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 13
BsmI GAATGC 2 cut(s) 445, 492
BsoBI CYCGRG 1 cut(s) 356
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 2 cut(s) 114, 357
Bsp1407I TGTACA 1 cut(s) 297
BspACI CCGC 2 cut(s) 159, 281
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 188
BstAUI TGTACA 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 3 cut(s) 184, 279, 455
BstDEI CTNAG 3 cut(s) 36, 417, 491
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 3 cut(s) 56, 179, 188
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 67, 68, 106
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 184, 279, 455
CfoI GCGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 60, 205
CviJI RGCY 6 cut(s) 112, 355, 386, 401, 422, 434
CviKI_1 RGCY 6 cut(s) 112, 355, 386, 401, 422, 434
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 36, 417, 491
Ecl136II GAGCTC 2 cut(s) 112, 355
Eco24I GRGCYC 2 cut(s) 114, 357
Eco53kI GAGCTC 2 cut(s) 112, 355
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 2 cut(s) 112, 355
EcoRII CCWGG 1 cut(s) 11
EcoT38I GRGCYC 2 cut(s) 114, 357
FaeI CATG 2 cut(s) 63, 208
FaiI YATR 4 cut(s) 21, 45, 61, 206
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 59, 204
Fnu4HI GCNGC 3 cut(s) 57, 81, 95
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 2 cut(s) 114, 357
Fsp4HI GCNGC 3 cut(s) 57, 81, 95
FspBI CTAG 5 cut(s) 156, 227, 323, 335, 342
GlaI GCGC 1 cut(s) 142
GluI GCNGC 3 cut(s) 57, 81, 95
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 144
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 63, 208
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 37, 438
Hpy188III TCNNGA 3 cut(s) 233, 323, 335
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 4 cut(s) 94, 202, 273, 376
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 50, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 179, 188
HpyF3I CTNAG 3 cut(s) 36, 417, 491
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 63, 208
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 146, 391
LpnPI CCDG 5 cut(s) 25, 129, 159, 218, 463
Lsp1109I GCAGC 3 cut(s) 67, 68, 106
LweI GCATC 2 cut(s) 264, 328
MaeI CTAG 5 cut(s) 156, 227, 323, 335, 342
MaeII ACGT 1 cut(s) 17
MboII GAAGA 2 cut(s) 340, 451
MhlI GDGCHC 2 cut(s) 114, 357
MluCI AATT 7 cut(s) 28, 105, 151, 307, 313, 476, 501
MnlI CCTC 4 cut(s) 16, 277, 358, 370
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 2 cut(s) 445, 492
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 56, 179, 188
NlaIII CATG 2 cut(s) 63, 208
NlaIV GGNNCC 1 cut(s) 387
NspV TTCGAA 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 356
PctI GAATGC 2 cut(s) 445, 492
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 3 cut(s) 58, 82, 96
Psp124BI GAGCTC 2 cut(s) 114, 357
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 387
PspXI VCTCGAGB 1 cut(s) 356
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacI GAGCTC 2 cut(s) 114, 357
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 3 cut(s) 57, 81, 95
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 2 cut(s) 114, 357
SetI ASST 4 cut(s) 20, 114, 357, 436
SfaNI GCATC 2 cut(s) 264, 328
Sfr274I CTCGAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 7 cut(s) 28, 105, 151, 307, 313, 476, 501
SsiI CCGC 2 cut(s) 159, 281
SspMI CTAG 5 cut(s) 156, 227, 323, 335, 342
SstI GAGCTC 2 cut(s) 114, 357
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 357, 469, 519
TasI AATT 7 cut(s) 28, 105, 151, 307, 313, 476, 501
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseI GCWGC 3 cut(s) 56, 80, 94
TspDTI ATGAA 2 cut(s) 193, 252
TspGWI ACGGA 1 cut(s) 488
XapI RAATTY 1 cut(s) 151
XbaI TCTAGA 2 cut(s) 322, 334
XhoI CTCGAG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 5 cut(s) 156, 227, 323, 335, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.