Rw2G020750

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018565
Physical Location & Seq
Forward (+)
28358242 .. 28362504
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020750.1

Sequence Viewer

Length: 813 bp
ATGGAGGTGTCAGAGAGGCTGGAGAGGGTGCAAAAGGCGTTGGAGAGTGCTGTGGAGGATATGGACTTGATGGGGAGGCTTTTGGATGAGCTTGATAAGCTTCAGAATCGGGCGCAGGAATGTGACTTGGGTATGGTGGATGCGAAGATTAGTAAGTTGATACCGGATCTTGGGTTTGCGCCCAAGGATGGGGACAGGTTGATGGCTTCGTTTAGTAGTGTGGAAACTGATATGGGTGTCTCCAGGACGTATGAGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGCGAGAAGCAGCAGAAGGAAATTGAACACACAAAAGACTTGATACACATGTTGGGCGCTGGAGCAAATTCTGGCCGTGCGTCTTCTGCTGGAAAGGCACGCCTTGCCTTCTGCAAGTTCATGGTAAAGCCATCTACTCTGCTAGTTCTGGATGAACCCACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGAGGAGGCAATAAATGAGTACAAAGGCACTGTTATCACAGTTTCTCATGACCGATACTTTATAAAGCAAATAGTTAATAGAGTAGTGGAGGTTAAAGACAGAAGACTGCAAGATTATGCAGGCAATTACAATTACTATCTAGAGAAGAATCTAGATGCTAGGGAAAGAGAGCTCGAGCGTGAGGCAGAGATTGAGGAGAAGGCTCCTAAAGTCAAAGCCAAATCAAAGATGTCTAAGGCTGAAAAGGAAGCTCGGAAGAAGCAAAAGATGCAGGCATTCCAGCAAGCAAAGGCAAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

270

Amino Acids

30.72

Weight (kDa)

6.2

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 74 - 136 9.2e-13 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 572
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 3 cut(s) 170, 188, 189
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 3 cut(s) 299, 341, 498
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 4 cut(s) 91, 100, 682, 761
AluI AGCT 4 cut(s) 91, 100, 682, 761
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 287, 311, 325
ApoI RAATTY 1 cut(s) 382
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 115, 181, 374
AvaI CYCGRG 1 cut(s) 683
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 2 cut(s) 390, 619
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 298, 299, 337
BccI CCATC 4 cut(s) 64, 182, 196, 454
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 4 cut(s) 458, 650, 662, 669
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 3 cut(s) 288, 312, 326
BlsI GCNGC 3 cut(s) 289, 313, 327
Bme1390I CCNGG 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 714
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 4 cut(s) 130, 495, 655, 768
BpiI GAAGAC 2 cut(s) 390, 619
BpmI CTGGAG 3 cut(s) 41, 226, 396
BpuEI CTTGAG 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 188, 189
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 91, 145, 193, 472
BseLI CCNNNNNNNGG 3 cut(s) 170, 188, 189
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 527, 719
BseXI GCAGC 3 cut(s) 298, 299, 337
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 170, 188, 189
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 1 cut(s) 390
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 714
BspPI GGATC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 541, 550
BstAPI GCANNNNNTGC 2 cut(s) 419, 778
BstC8I GCNNGC 5 cut(s) 316, 415, 631, 783, 795
BstDEI CTNAG 2 cut(s) 267, 744
BstF5I GGATG 4 cut(s) 91, 145, 193, 472
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 3 cut(s) 115, 181, 374
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 6 cut(s) 97, 287, 401, 410, 419, 778
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 298, 299, 337
BstV2I GAAGAC 2 cut(s) 390, 619
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 4 cut(s) 91, 145, 193, 472
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 5 cut(s) 316, 415, 631, 783, 795
CciI TCATGA 1 cut(s) 556
CfoI GCGC 3 cut(s) 115, 181, 374
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 529
CviAII CATG 4 cut(s) 291, 364, 436, 557
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 267, 744
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 4 cut(s) 294, 367, 439, 560
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 1 cut(s) 206
FatI CATG 4 cut(s) 290, 363, 435, 556
Fnu4HI GCNGC 3 cut(s) 288, 312, 326
FokI GGATG 4 cut(s) 98, 152, 200, 479
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 3 cut(s) 288, 312, 326
FspBI CTAG 4 cut(s) 458, 650, 662, 669
GlaI GCGC 3 cut(s) 114, 180, 373
GluI GCNGC 3 cut(s) 288, 312, 326
GsuI CTGGAG 3 cut(s) 41, 226, 396
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 390
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 384
HhaI GCGC 3 cut(s) 115, 181, 374
Hin1II CATG 4 cut(s) 294, 367, 439, 560
Hin6I GCGC 3 cut(s) 113, 179, 372
HinP1I GCGC 3 cut(s) 113, 179, 372
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 106, 658
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 13, 105, 268, 765
Hpy188III TCNNGA 4 cut(s) 464, 557, 650, 662
HpyAV CCTTC 4 cut(s) 325, 433, 504, 703
HpyCH4III ACNGT 2 cut(s) 541, 550
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 6 cut(s) 31, 281, 429, 619, 629, 781
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 287, 401, 410, 419, 778
HpyF3I CTNAG 2 cut(s) 267, 744
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 4 cut(s) 294, 367, 439, 560
HspAI GCGC 3 cut(s) 113, 179, 372
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 377, 718
Lsp1109I GCAGC 3 cut(s) 298, 299, 337
LweI GCATC 4 cut(s) 130, 495, 655, 768
MaeI CTAG 4 cut(s) 458, 650, 662, 669
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 122
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 5 cut(s) 157, 390, 624, 667, 778
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 5 cut(s) 259, 336, 382, 634, 640
MmeI TCCRAC 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 262
MseI TTAA 2 cut(s) 585, 603
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 6 cut(s) 97, 287, 401, 410, 419, 778
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 294, 367, 439, 560
NlaIV GGNNCC 1 cut(s) 714
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 683
PagI TCATGA 1 cut(s) 556
PciI ACATGT 1 cut(s) 363
PctI GAATGC 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 106, 658
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 3 cut(s) 289, 313, 327
PscI ACATGT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 714
PspXI VCTCGAGB 1 cut(s) 683
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 585, 603
SatI GCNGC 3 cut(s) 288, 312, 326
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 684
SetI ASST 8 cut(s) 9, 93, 102, 200, 251, 603, 684, 763
SfaNI GCATC 4 cut(s) 130, 495, 655, 768
Sfr274I CTCGAG 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 509, 683
SmoI CTYRAG 2 cut(s) 509, 683
Sse9I AATT 5 cut(s) 259, 336, 382, 634, 640
SspMI CTAG 4 cut(s) 458, 650, 662, 669
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 541, 550
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 684
TaqII GACCGA 1 cut(s) 576
TasI AATT 5 cut(s) 259, 336, 382, 634, 640
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 2 cut(s) 106, 658
Tru1I TTAA 2 cut(s) 585, 603
Tru9I TTAA 2 cut(s) 585, 603
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 287, 311, 325
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 424, 483
TspRI CASTG 1 cut(s) 544
XapI RAATTY 1 cut(s) 382
XbaI TCTAGA 2 cut(s) 649, 661
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XhoI CTCGAG 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 262
XspI CTAG 4 cut(s) 458, 650, 662, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.