Rh2BG275600

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018565
Physical Location & Seq
Forward (+)
29946754 .. 29950263
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG275600.1

Sequence Viewer

Length: 408 bp
ATGGTTATCATATCTCATGACCGAGCTTTTCTTGATCAATTGTGTACAAAAATAGTGGAAACTGATATGGGTGTCTCCAGGACGTATGAGGGAAATTATTCTGAGTATTATATTGCAAAGGCAGCATGGATTGAAAGTCAAAATGCTGCTTGCGAGAAGCAGCAGAAGGAGATTGAACACACAAAAGACTTGATACACAGGTTGGGCGCTGGAGCATATTCTGGCCGTGCGTCTTCTGCTGGAAAGGCACGCCTTACCTTCTGCAAGTTCATGGTAAAGCCATCTACTCTACTAGTTCTGGATGAACCGACAAATCACTTGGACATTCCTTCAAAAGAGATGCTTGAGGTATTCCCACCTTTTTCTTTCCATTCTGTGTTCCACAATAAATGGTTTATAGTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran ABC_tran_Xtn

Protein Analysis

135

Amino Acids

15.39

Weight (kDa)

6.58

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran_Xtn PF12848 19 - 80 2.5e-14 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018565)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116711
rosa_roxburghii Rroxscaffold_7G00160560
rosa_samantha Rh2AG264700 Rh2BG275600 Rh2BG278400 Rh2DG272000 Rh2DG290000
rosa_wichuraiana Rw2G020750 Rw2G020780 Rw2G020830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 223
AfaI GTAC 2 cut(s) 46, 402
AgsI TTSAA 3 cut(s) 134, 176, 333
AhlI ACTAGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 122, 146, 160
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 209
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 133, 134, 172
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 79
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 3 cut(s) 123, 147, 161
BlsI GCNGC 3 cut(s) 124, 148, 162
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 61, 231
BpuEI CTTGAG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 133, 134, 172
BshFI GGCC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 225
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 44
BssMI GATC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 79
BstAUI TGTACA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 151, 250
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 122, 236, 245
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 133, 134, 172
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 151, 250
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 209
CseI GACGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 45, 401
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 3 cut(s) 17, 126, 271
CviJI RGCY 3 cut(s) 26, 225, 280
CviKI_1 RGCY 3 cut(s) 26, 225, 280
CviQI GTAC 2 cut(s) 45, 401
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 20, 129, 274
FaiI YATR 9 cut(s) 11, 18, 68, 87, 111, 127, 217, 272, 398
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 3 cut(s) 16, 125, 270
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 123, 147, 161
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 123, 147, 161
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 123, 147, 161
GsuI CTGGAG 2 cut(s) 61, 231
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 209
Hin1II CATG 3 cut(s) 20, 129, 274
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 17, 32, 299
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 3 cut(s) 160, 268, 339
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 116, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 236, 245
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 3 cut(s) 20, 129, 274
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 64, 91, 184, 195, 207, 225, 284
Lsp1109I GCAGC 3 cut(s) 133, 134, 172
LweI GCATC 1 cut(s) 330
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 83
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 225
MfeI CAATTG 1 cut(s) 38
MluCI AATT 2 cut(s) 38, 94
MnlI CCTC 2 cut(s) 82, 340
MroXI GAANNNNTTC 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 122, 236, 245
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 20, 129, 274
PagI TCATGA 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 3 cut(s) 124, 148, 162
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
RsaI GTAC 2 cut(s) 46, 402
RsaNI GTAC 2 cut(s) 45, 401
SatI GCNGC 3 cut(s) 123, 147, 161
Sau3AI GATC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 402
ScrFI CCNGG 1 cut(s) 79
SetI ASST 6 cut(s) 28, 86, 203, 260, 351, 361
SfaNI GCATC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 2 cut(s) 38, 94
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 77
TaiI ACGT 1 cut(s) 86
TaqII GACCGA 1 cut(s) 36
TasI AATT 2 cut(s) 38, 94
TatI WGTACW 2 cut(s) 44, 400
TseI GCWGC 3 cut(s) 122, 146, 160
TspDTI ATGAA 2 cut(s) 259, 318
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.