RchiOBHm_Chr2g0124891

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012041
Physical Location & Seq
Forward (+)
38414379 .. 38417695
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49704

Sequence Viewer

Length: 1518 bp
ATGAGCAGCCTGGAAGACTCTTTTAGATCTCTGTCCCTAGACTACCTCAATCTCCTCATCAACGGCCAAGCCTTCAGTGATGTCACCTTCAGCGTGGAGGGTCGTCTGGTTCACGCGCACAGGTGCATCCTGGCTGCCCGGAGCCTCTTCTTCCGGAAGTTCTTCTGCGGGCCGGACCCTCCTTCTGGGCTTGACCCGGTGTCGTCGCCTGGGTCGTGCAGGTCGGGTACGTCGTCGTCGACGTCACAGAGAGGGATGAGCAATTCGCAGGTAATACCGGTCAACTCGGTCGGGTACGAGGTGTTCTTATTGCTGCTGCAGTTTTTGTACAGCGGACAGGTCTCGATAGTGCCTCAGAAACATGAGCCAAGGCCTAATTGTGGGGAGAGGGGCTGTTGGCACACGCATTGCACCTCAGCCGTCGATCTCGCCCTTGACACTCTCGCCGCCGCTAGATCTTTTGGTGTAGAACAACTTGCATTGCTCACTCAGAAGCAATTGGCTAGCATGGTGGAAAAGGCGTCGATTGATGATGTGATGAAAGTGCTATTAGCTTCCAGAAAGCAGGACATGCACCAACTCTGGACAACGTGTTCTCACCTTGTTGCCAAATCTGGTCTCCCGCCGGAGGTGCTCGCCAAGCACCTTCCCATCGACGTAGTGGCCAAAATCGAAGAGCTCCGCCTCAAATCCTCCATCGCACGCCGCTCAATGATGCCCCATCACCACCACCACCACCACCACCACCACGACATGGGTGCTGCTGCGGATCTCGAGGACCAGAAGATTCGTCGAATGAGGCGAGCATTGGACTCATCGGATGTAGAGCTGGTCAAGCTCATGGTGATGGGAGAAGGCCTAAATCTGGACGAGGCACTGGCATTACACTATGCTGTCGAAAGTTGTAGCCGAGAGGTAGTGAAAGCTTTGCTTGAACTCGGAGCAGCCGATGTTAACTACCCGGCTGGGCCAGCTGGCAAAACCCCACTCCACATTGCCTCTGAAATGGTGTCTCCGGACATGGTGGCCGTGCTCCTCGATCACCATGCTGACCCCAATGTCCGAACCGTCGACGGAGTCACTCCACTCGATGTGCTTCGAACCCTAACATCGGATTTTCTCTTCAAAGGAGCTGTTCCCGGACTGACGCACATCGAACCCAACAAGCTCAGGCTCTGCCTTGAACTTGTTCAATCGGCTGCTCTTGTTCTTTCGCGCGAAGAAGGCAATAACAATGCAAACAATTCTGCTTCTAATTCTTCGAATACGGCCATCTATCCACCGATGAGTGACCATCACGATCATCATAGCAGCGGCAGTGGCGGCAGCAATATTAGCCTTAACTTGGATTCGAGATTGGTGTATTTGAATCTTGGGGCAACTGGGTCATCCACGGCTCAAAATCAAATGGGCTCTTCGAGAATGGATAGTGAAGATCATCAACATCATCATCATTCTCATGGTAGACAAGGTGGCTGTGATCCATCAACAATGTACCACCAATCCCATGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009798 GO:0009838 GO:0009864 GO:0009867 GO:0009888 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010022 GO:0010033 GO:0010073 GO:0010227 GO:0010254 GO:0010432 GO:0010433 GO:0010434 GO:0010498 GO:0010582 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022414 GO:0023052 GO:0030162 GO:0030163 GO:0031347 GO:0031349 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048366 GO:0048367 GO:0048437 GO:0048439 GO:0048507 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090567 GO:0090698 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1905392 GO:1905393 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank_2 Ank_3 BTB DUF3420

Protein Analysis

505

Amino Acids

55.09

Weight (kDa)

6.28

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 19 - 57 1.2e-07 BTB/POZ domain
DUF3420 PF11900 206 - 267 2.6e-12 Domain of unknown function (DUF3420)
Ank_2 PF12796 272 - 355 4.9e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 311 - 365 5e-07 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41370 AT3G57130
fragaria_vesca FvH4_6g25090
malus_domestica MD12G1091100.v1.1 MD14G1083700.v1.1
prunus_persica Prupe.7G046800_v2.0.a1
pyrus_communis pycom12g07650 pycom14g07290
rosa_chinensis RchiOBHm_Chr2g0124891
rosa_laevigata RLG00000018831
rosa_multiflora Rmu_sc0005075.1_g000013
rosa_roxburghii Rroxscaffold_2G00119550
rosa_rugosa Rorug02G0253100
rosa_samantha Rh2AG312800 Rh2BG321000 Rh2CG302300 Rh2DG338400
rosa_wichuraiana Rw0G021780 Rw2G025260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
AatII GACGTC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 210, 259
AccB7I CCANNNNNTGG 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 3 cut(s) 239, 1071, 1465
AccII CGCG 3 cut(s) 116, 1216, 1218
AccIII TCCGGA 2 cut(s) 153, 1015
AclWI GGATC 2 cut(s) 777, 1475
AcoI YGGCCR 4 cut(s) 64, 663, 1026, 1269
AcuI CTGAAG 2 cut(s) 58, 73
AcyI GRCGYC 2 cut(s) 242, 521
AfaI GTAC 4 cut(s) 229, 296, 329, 1496
AfiI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 754, 865, 1111, 1345
AflIII ACRYGT 1 cut(s) 590
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 5 cut(s) 935, 1126, 1184, 1193, 1369
AhdI GACNNNNNGTC 1 cut(s) 199
AjnI CCWGG 3 cut(s) 9, 129, 208
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 8 cut(s) 554, 679, 829, 838, 926, 974, 1133, 1168
AluI AGCT 8 cut(s) 554, 679, 829, 838, 926, 974, 1133, 1168
Alw21I GWGCWC 3 cut(s) 636, 681, 1035
Alw26I GTCTC 3 cut(s) 346, 623, 1017
AlwI GGATC 2 cut(s) 777, 1475
AlwNI CAGNNNCTG 1 cut(s) 1176
Ama87I CYCGRG 1 cut(s) 773
Aor13HI TCCGGA 2 cut(s) 153, 1015
AoxI GGCC 8 cut(s) 64, 170, 371, 663, 856, 968, 1026, 1269
AsiGI ACCGGT 1 cut(s) 277
Asp700I GAANNNNTTC 2 cut(s) 161, 1188
AspLEI GCGC 2 cut(s) 118, 1218
AspS9I GGNCC 4 cut(s) 170, 175, 778, 968
AsuC2I CCSGG 4 cut(s) 139, 197, 962, 1140
AsuHPI GGTGA 5 cut(s) 76, 590, 716, 856, 1034
AsuII TTCGAA 2 cut(s) 1099, 1262
AsuNHI GCTAGC 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 2 cut(s) 175, 778
BalI TGGCCA 1 cut(s) 665
BanII GRGCYC 2 cut(s) 681, 1415
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 3 cut(s) 636, 681, 1035
BbvCI CCTCAGC 1 cut(s) 415
BccI CCATC 7 cut(s) 659, 704, 729, 841, 1280, 1302, 1492
BceAI ACGGC 5 cut(s) 79, 404, 1013, 1284, 1410
BcgI CGANNNNNNTGC 4 cut(s) 740, 774, 1028, 1062
BciT130I CCWGG 3 cut(s) 11, 131, 210
BcnI CCSGG 4 cut(s) 139, 197, 962, 1140
BcoDI GTCTC 3 cut(s) 346, 623, 1017
BfaI CTAG 4 cut(s) 38, 453, 504, 1516
BfmI CTRYAG 1 cut(s) 317
BfuAI ACCTGC 2 cut(s) 210, 259
BglII AGATCT 2 cut(s) 26, 455
Bme1390I CCNGG 7 cut(s) 11, 131, 139, 197, 210, 962, 1140
Bme18I GGWCC 2 cut(s) 175, 778
BmeRI GACNNNNNGTC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 4 cut(s) 170, 175, 778, 968
BmiI GGNNCC 2 cut(s) 143, 177
BmrFI CCNGG 7 cut(s) 11, 131, 139, 197, 210, 962, 1140
BmrI ACTGGG 1 cut(s) 1392
BmsI GCATC 2 cut(s) 135, 705
BmtI GCTAGC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 1392
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 2 cut(s) 415, 1169
Bpu14I TTCGAA 2 cut(s) 1099, 1262
BpuMI CCSGG 4 cut(s) 139, 197, 962, 1140
BsaHI GRCGYC 2 cut(s) 242, 521
BsaI GGTCTC 2 cut(s) 346, 623
BsaJI CCNNGG 3 cut(s) 209, 368, 1392
BsaWI WCCGGW 3 cut(s) 153, 277, 1015
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 380, 628, 754, 865, 1111, 1345
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 882, 1387
Bse3DI GCAATG 3 cut(s) 406, 479, 993
BseAI TCCGGA 2 cut(s) 153, 1015
BseBI CCWGG 3 cut(s) 11, 131, 210
BseDI CCNNGG 3 cut(s) 209, 368, 1392
BseGI GGATG 4 cut(s) 126, 261, 826, 1388
BseLI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 754, 865, 1111, 1345
BseMI GCAATG 3 cut(s) 406, 479, 993
BseMII CTCAG 4 cut(s) 368, 429, 503, 1183
BseNI ACTGG 2 cut(s) 882, 1387
BseRI GAGGAG 2 cut(s) 44, 1025
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 3 cut(s) 116, 1216, 1218
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 8 cut(s) 66, 172, 373, 665, 858, 970, 1028, 1271
BshTI ACCGGT 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 3 cut(s) 636, 681, 1035
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 962, 1016, 1140
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 754, 865, 1111, 1345
BsmAI GTCTC 3 cut(s) 346, 623, 1017
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 8 cut(s) 66, 172, 373, 665, 858, 970, 1028, 1271
Bso31I GGTCTC 2 cut(s) 346, 623
BsoBI CYCGRG 1 cut(s) 773
Bsp119I TTCGAA 2 cut(s) 1099, 1262
Bsp1286I GDGCHC 4 cut(s) 636, 681, 1035, 1415
Bsp13I TCCGGA 2 cut(s) 153, 1015
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
BspANI GGCC 8 cut(s) 66, 172, 373, 665, 858, 970, 1028, 1271
BspCNI CTCAG 4 cut(s) 367, 428, 502, 1182
BspEI TCCGGA 2 cut(s) 153, 1015
BspFNI CGCG 3 cut(s) 116, 1216, 1218
BspLI GGNNCC 2 cut(s) 143, 177
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 2 cut(s) 210, 259
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 777, 1475
BspQI GCTCTTC 2 cut(s) 669, 1420
BspT104I TTCGAA 2 cut(s) 1099, 1262
BspTNI GGTCTC 2 cut(s) 346, 623
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 3 cut(s) 406, 479, 993
BsrFI RCCGGY 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 882, 1387
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 209, 368, 1392
BssMI GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
BssNI GRCGYC 2 cut(s) 242, 521
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 11, 131, 210
Bst4CI ACNGT 1 cut(s) 1069
Bst6I CTCTTC 4 cut(s) 152, 669, 1127, 1420
BstACI GRCGYC 2 cut(s) 242, 521
BstAPI GCANNNNNTGC 1 cut(s) 571
BstAUI TGTACA 1 cut(s) 327
BstBI TTCGAA 2 cut(s) 1099, 1262
BstC8I GCNNGC 7 cut(s) 170, 505, 636, 703, 804, 972, 976
BstDEI CTNAG 4 cut(s) 354, 415, 489, 1169
BstDSI CCRYGG 1 cut(s) 1392
BstF5I GGATG 4 cut(s) 126, 261, 826, 1388
BstFNI CGCG 3 cut(s) 116, 1216, 1218
BstHHI GCGC 2 cut(s) 118, 1218
BstKTI GATC 8 cut(s) 29, 427, 458, 772, 1042, 1303, 1438, 1483
BstMAI GTCTC 3 cut(s) 346, 623, 1017
BstMBI GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 835, 971, 1224, 1320, 1323, 1335
BstNI CCWGG 3 cut(s) 11, 131, 210
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 7 cut(s) 9, 129, 137, 195, 208, 960, 1138
BstSFI CTRYAG 1 cut(s) 317
BstUI CGCG 3 cut(s) 116, 1216, 1218
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 26, 455, 769
BstYI RGATCY 3 cut(s) 26, 455, 769
BsuRI GGCC 8 cut(s) 66, 172, 373, 665, 858, 970, 1028, 1271
BtgI CCRYGG 1 cut(s) 1392
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 4 cut(s) 126, 261, 826, 1388
BtsI GCAGTG 1 cut(s) 1324
BtsIMutI CAGTG 3 cut(s) 82, 875, 1324
BveI ACCTGC 2 cut(s) 210, 259
Cac8I GCNNGC 7 cut(s) 170, 505, 636, 703, 804, 972, 976
CaiI CAGNNNCTG 1 cut(s) 1176
CfoI GCGC 2 cut(s) 118, 1218
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 4 cut(s) 170, 175, 778, 968
CseI GACGC 2 cut(s) 510, 1156
Csp6I GTAC 4 cut(s) 228, 295, 328, 1495
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 9 cut(s) 362, 508, 571, 754, 841, 1021, 1046, 1460, 1508
CviQI GTAC 4 cut(s) 228, 295, 328, 1495
DdeI CTNAG 4 cut(s) 354, 415, 489, 1169
DpnI GATC 8 cut(s) 28, 426, 457, 771, 1041, 1302, 1437, 1482
DpnII GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
DrdI GACNNNNNNGTC 1 cut(s) 1058
DriI GACNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 1058
EaeI YGGCCR 4 cut(s) 64, 663, 1026, 1269
Eam1104I CTCTTC 4 cut(s) 152, 669, 1127, 1420
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 4 cut(s) 152, 669, 1127, 1420
EciI GGCGGA 1 cut(s) 671
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 2 cut(s) 373, 858
Eco24I GRGCYC 2 cut(s) 681, 1415
Eco31I GGTCTC 2 cut(s) 346, 623
Eco47I GGWCC 2 cut(s) 175, 778
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 58, 73
Eco88I CYCGRG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 679
EcoRII CCWGG 3 cut(s) 9, 129, 208
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 681, 1415
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 9 cut(s) 365, 511, 574, 757, 844, 1024, 1049, 1463, 1511
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 1 cut(s) 19
FatI CATG 9 cut(s) 361, 507, 570, 753, 840, 1020, 1045, 1459, 1507
FauI CCCGC 2 cut(s) 161, 630
FblI GTMKAC 3 cut(s) 239, 1071, 1465
FokI GGATG 4 cut(s) 113, 268, 833, 1375
FriOI GRGCYC 2 cut(s) 681, 1415
FspBI CTAG 4 cut(s) 38, 453, 504, 1516
GlaI GCGC 2 cut(s) 117, 1217
GsaI CCCAGC 1 cut(s) 969
HaeIII GGCC 8 cut(s) 66, 172, 373, 665, 858, 970, 1028, 1271
HapII CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 962, 1016, 1140
HgaI GACGC 2 cut(s) 510, 1156
HhaI GCGC 2 cut(s) 118, 1218
Hin1I GRCGYC 2 cut(s) 242, 521
Hin1II CATG 9 cut(s) 365, 511, 574, 757, 844, 1024, 1049, 1463, 1511
Hin6I GCGC 2 cut(s) 116, 1216
HinP1I GCGC 2 cut(s) 116, 1216
HincII GTYRAC 4 cut(s) 240, 283, 955, 1072
HindII GTYRAC 4 cut(s) 240, 283, 955, 1072
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 6 cut(s) 17, 787, 812, 1077, 1349, 1369
HpaI GTTAAC 1 cut(s) 955
HpaII CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 962, 1016, 1140
HphI GGTGA 5 cut(s) 76, 590, 716, 856, 1034
Hpy166II GTNNAC 6 cut(s) 112, 240, 283, 955, 1072, 1466
Hpy188I TCNGA 7 cut(s) 357, 492, 820, 941, 1003, 1064, 1114
Hpy8I GTNNAC 6 cut(s) 112, 240, 283, 955, 1072, 1466
HpyAV CCTTC 6 cut(s) 82, 97, 192, 656, 848, 1217
HpyCH4III ACNGT 1 cut(s) 1069
HpyCH4IV ACGT 4 cut(s) 230, 242, 590, 657
HpyCH4V TGCA 7 cut(s) 126, 219, 319, 411, 479, 574, 1238
HpyF10VI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 835, 971, 1224, 1320, 1323, 1335
HpyF3I CTNAG 4 cut(s) 354, 415, 489, 1169
HpySE526I ACGT 4 cut(s) 230, 242, 590, 657
Hsp92I GRCGYC 2 cut(s) 242, 521
Hsp92II CATG 9 cut(s) 365, 511, 574, 757, 844, 1024, 1049, 1463, 1511
HspAI GCGC 2 cut(s) 116, 1216
Kpn2I TCCGGA 2 cut(s) 153, 1015
KspAI GTTAAC 1 cut(s) 955
Kzo9I GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
LguI GCTCTTC 2 cut(s) 669, 1420
LmnI GCTCC 5 cut(s) 141, 684, 941, 1038, 1130
LweI GCATC 2 cut(s) 135, 705
MaeI CTAG 4 cut(s) 38, 453, 504, 1516
MaeII ACGT 4 cut(s) 230, 242, 590, 657
MaeIII GTNAC 4 cut(s) 82, 243, 1078, 1289
MalI GATC 8 cut(s) 28, 426, 457, 771, 1041, 1302, 1437, 1482
MbiI CCGCTC 1 cut(s) 708
MboI GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 3 cut(s) 26, 455, 769
MhlI GDGCHC 4 cut(s) 636, 681, 1035, 1415
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 5 cut(s) 262, 376, 497, 1243, 1255
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 3 cut(s) 11, 806, 1086
Mox20I TGGCCA 1 cut(s) 665
MroI TCCGGA 2 cut(s) 153, 1015
MroXI GAANNNNTTC 2 cut(s) 161, 1188
MscI TGGCCA 1 cut(s) 665
MseI TTAA 2 cut(s) 954, 1341
MslI CAYNNNNRTG 2 cut(s) 845, 1458
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 3 cut(s) 333, 974, 1314
MspI CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 962, 1016, 1140
MspR9I CCNGG 7 cut(s) 11, 131, 139, 197, 210, 962, 1140
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 3 cut(s) 11, 131, 210
MvnI CGCG 3 cut(s) 116, 1216, 1218
MwoI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 835, 971, 1224, 1320, 1323, 1335
NciI CCSGG 4 cut(s) 139, 197, 962, 1140
NdeII GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 9 cut(s) 365, 511, 574, 757, 844, 1024, 1049, 1463, 1511
NlaIV GGNNCC 2 cut(s) 143, 177
NmeAIII GCCGAG 1 cut(s) 935
NmuCI GTSAC 4 cut(s) 82, 243, 1078, 1289
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 2 cut(s) 1099, 1262
PaeR7I CTCGAG 1 cut(s) 773
PceI AGGCCT 2 cut(s) 373, 858
PciSI GCTCTTC 2 cut(s) 669, 1420
PcsI WCGNNNNNNNCGW 6 cut(s) 212, 230, 236, 239, 799, 945
PdmI GAANNNNTTC 2 cut(s) 161, 1188
PfeI GAWTC 3 cut(s) 787, 1349, 1369
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 1138
PinAI ACCGGT 1 cut(s) 277
PleI GAGTC 3 cut(s) 11, 806, 1085
PpsI GAGTC 3 cut(s) 11, 806, 1085
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 3 cut(s) 9, 129, 208
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 9, 129, 208
PspN4I GGNNCC 2 cut(s) 143, 177
PspPI GGNCC 4 cut(s) 170, 175, 778, 968
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 1176
PsuI RGATCY 3 cut(s) 26, 455, 769
PsyI GACNNNGTC 1 cut(s) 1076
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 4 cut(s) 229, 296, 329, 1496
RsaNI GTAC 4 cut(s) 228, 295, 328, 1495
RseI CAYNNNNRTG 2 cut(s) 845, 1458
SacI GAGCTC 1 cut(s) 681
SalI GTCGAC 2 cut(s) 238, 1070
SapI GCTCTTC 2 cut(s) 669, 1420
SaqAI TTAA 2 cut(s) 954, 1341
Sau3AI GATC 8 cut(s) 26, 424, 455, 769, 1039, 1300, 1435, 1480
Sau96I GGNCC 4 cut(s) 170, 175, 778, 968
SchI GAGTC 3 cut(s) 11, 806, 1086
ScrFI CCNGG 7 cut(s) 11, 131, 139, 197, 210, 962, 1140
SduI GDGCHC 4 cut(s) 636, 681, 1035, 1415
SfaNI GCATC 2 cut(s) 135, 705
SfcI CTRYAG 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 773
SfuI TTCGAA 2 cut(s) 1099, 1262
SgrDI CGTCGACG 2 cut(s) 238, 1070
SinI GGWCC 2 cut(s) 175, 778
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 2 cut(s) 845, 1458
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 5 cut(s) 262, 376, 497, 1243, 1255
SseBI AGGCCT 2 cut(s) 373, 858
SspI AATATT 1 cut(s) 1333
SspMI CTAG 4 cut(s) 38, 453, 504, 1516
SstI GAGCTC 1 cut(s) 681
StuI AGGCCT 2 cut(s) 373, 858
StyD4I CCNGG 7 cut(s) 9, 129, 137, 195, 208, 960, 1138
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 1069
TaiI ACGT 4 cut(s) 233, 245, 593, 660
TaqII GACCGA 1 cut(s) 277
TasI AATT 5 cut(s) 262, 376, 497, 1243, 1255
TatI WGTACW 1 cut(s) 327
TauI GCSGC 5 cut(s) 449, 452, 708, 1317, 1326
TfiI GAWTC 3 cut(s) 787, 1349, 1369
Tru1I TTAA 2 cut(s) 954, 1341
Tru9I TTAA 2 cut(s) 954, 1341
TscAI CASTG 3 cut(s) 82, 882, 1324
TseFI GTSAC 4 cut(s) 82, 243, 1078, 1289
Tsp45I GTSAC 4 cut(s) 82, 243, 1078, 1289
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 1089
TspRI CASTG 3 cut(s) 82, 882, 1324
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 175, 778
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 773
XmiI GTMKAC 3 cut(s) 239, 1071, 1465
XmnI GAANNNNTTC 2 cut(s) 161, 1188
XspI CTAG 4 cut(s) 38, 453, 504, 1516
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.