Rroxscaffold_2G00119550

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012041
Physical Location & Seq
Reverse (-)
51410567 .. 51413312
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119550.1

Sequence Viewer

Length: 1515 bp
ATGAGCAGCCTGGAAGACTCTTTTAGATCTCTGTCCCTAGACTACCTCAATCTCCTCATCAACGGCCAAGCCTTCAGTGATGTCACCTTCAGCGTGGAGGGTCGTCTGGTTCACGCGCACAGGTGCATCCTGGCTGCCCGGAGCCTCTTCTTCCGGAAGTTCTTCTGCGGGCCGGACCCTCCTTCTGGGCTTGACCCGGTGTCGTCGCCTGGGTCGTGCAGGTCGGGTACGTCGTCGTCGACGTCACAGAGAGGGATGAGCAATTCGCAGGTAATACCGGTGAACTCGGTCGGGTACGAGGTGTTCTTGTTGCTGCTGCAGTTTTTGTACAGCGGACAGGTCTCGATAGTGCCTCAGAAACATGAGCCAAGGCCTAATTGTGGGGAGAGGGGCTGTTGGCACACGCATTGCACCTCAGCCGTCGATCTCGCCCTTGACACTCTCGCCGCCGCTAGATCTTTTGGTGTTGAACAACTTGCATTGCTCACTCAGAAGCAATTGGCTAGCATGGTGGAAAAGGCGTCGATTGATGATGTGATGAAAGTGCTATTAGCTTCCAGAAAGCAGGACATGCACCAACTCTGGACAACGTGCTCTCACCTTGTTGCCAAATCTGGTCTCCCGCCGGAGGTGCTCGCCAAGCACCTTCCCATCGACGTAGTGGCCAAAATCGAAGAGCTCCGCCTCAAATCCTCCATCGCACGCCGCTCAATGATGCCCCATCACCACCACCATCACCACCACCACGACATGGGTGCTGCGGCTGATCTCGAGGACCAGAAGATTCGTCGAATGAGGCGAGCATTGGACTCATCGGATGTAGAGCTGGTCAAGCTCATGGTGATGGGAGAAGGCCTAAATCTGGACGAGGCACTGGCATTACACTATGCTGTCGAAAGTTGTAGCCGAGAGGTAGTGAAAGCTTTGCTTGAACTCGGAGCAGCCGATGTTAACTACCCGGCTGGGCCAGCTGGCAAAACCCCACTCCACATTGCCTCTGAAATGGTGTCTCCGGACATGGTGGCCGTGCTCCTCGACCACCATGCTGACCCCAATGTCCGAACCGTCGACGGAGTCACTCCACTCGATGTGCTTCGAACCCTAACATCGGATTTTCTCTTCAAAGGAGCTGTTCCCGGACTGACGCACATCGAACCCAACAAGCTCAGGCTCTGCCTTGAACTTGTTCAATCGGCTGCTCTTGTTCTTTCGCGCGAAGAAGGCAATAACAATGCAAACAATTCTGCTTCTAATTCTTCGAACACGGCCATCTATCCACCGATGAGTGACCATCACGATCATCATAGCAGCGGCAGTGGCGGCAGCAATATTAGCCTTAACTTGGATTCGAGATTGGTGTATTTGAATCTTGGGGCAACTGGGTCATCCACGGCTCAAAATCAAATGGGCTCTTCGAGAATGGATAGTGAAGATCATCAACATCATCATCATTCTCATGGTAGACAAGGTGGCTGTGATCCATCAACAATGTACCACCACTCCCATGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009798 GO:0009838 GO:0009864 GO:0009867 GO:0009888 GO:0009908 GO:0009943 GO:0009944 GO:0009954 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010022 GO:0010033 GO:0010073 GO:0010227 GO:0010254 GO:0010432 GO:0010433 GO:0010434 GO:0010498 GO:0010582 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022414 GO:0023052 GO:0030162 GO:0030163 GO:0031347 GO:0031349 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048366 GO:0048367 GO:0048437 GO:0048439 GO:0048507 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090567 GO:0090698 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1905392 GO:1905393 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank_2 Ank_3 BTB DUF3420

Protein Analysis

504

Amino Acids

54.97

Weight (kDa)

6.28

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 19 - 57 1.2e-07 BTB/POZ domain
DUF3420 PF11900 206 - 266 2e-12 Domain of unknown function (DUF3420)
Ank_2 PF12796 271 - 354 4.9e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 310 - 364 5e-07 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41370 AT3G57130
fragaria_vesca FvH4_6g25090
malus_domestica MD12G1091100.v1.1 MD14G1083700.v1.1
prunus_persica Prupe.7G046800_v2.0.a1
pyrus_communis pycom12g07650 pycom14g07290
rosa_chinensis RchiOBHm_Chr2g0124891
rosa_laevigata RLG00000018831
rosa_multiflora Rmu_sc0005075.1_g000013
rosa_roxburghii Rroxscaffold_2G00119550
rosa_rugosa Rorug02G0253100
rosa_samantha Rh2AG312800 Rh2BG321000 Rh2CG302300 Rh2DG338400
rosa_wichuraiana Rw0G021780 Rw2G025260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1055
AatII GACGTC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 210, 259
AccB7I CCANNNNNTGG 1 cut(s) 751
AccBSI CCGCTC 1 cut(s) 708
AccI GTMKAC 3 cut(s) 239, 1068, 1462
AccII CGCG 3 cut(s) 116, 1213, 1215
AccIII TCCGGA 2 cut(s) 153, 1012
AclWI GGATC 1 cut(s) 1472
AcoI YGGCCR 4 cut(s) 64, 663, 1023, 1266
AcuI CTGAAG 2 cut(s) 58, 73
AcyI GRCGYC 2 cut(s) 242, 521
AfaI GTAC 4 cut(s) 229, 296, 329, 1493
AfiI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 751, 862, 1108, 1342
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 6 cut(s) 470, 932, 1123, 1181, 1190, 1366
AhdI GACNNNNNGTC 1 cut(s) 199
AjnI CCWGG 3 cut(s) 9, 129, 208
AluBI AGCT 8 cut(s) 554, 679, 826, 835, 923, 971, 1130, 1165
AluI AGCT 8 cut(s) 554, 679, 826, 835, 923, 971, 1130, 1165
Alw21I GWGCWC 4 cut(s) 596, 636, 681, 1032
Alw26I GTCTC 3 cut(s) 346, 623, 1014
AlwI GGATC 1 cut(s) 1472
AlwNI CAGNNNCTG 1 cut(s) 1173
Ama87I CYCGRG 1 cut(s) 770
Aor13HI TCCGGA 2 cut(s) 153, 1012
AoxI GGCC 8 cut(s) 64, 170, 371, 663, 853, 965, 1023, 1266
ApeKI GCWGC 9 cut(s) 6, 134, 313, 316, 758, 941, 1196, 1308, 1323
AsiGI ACCGGT 1 cut(s) 277
Asp700I GAANNNNTTC 2 cut(s) 161, 1185
AspLEI GCGC 2 cut(s) 118, 1215
AspS9I GGNCC 4 cut(s) 170, 175, 775, 965
AsuC2I CCSGG 4 cut(s) 139, 197, 959, 1137
AsuHPI GGTGA 6 cut(s) 76, 292, 590, 716, 728, 853
AsuII TTCGAA 2 cut(s) 1096, 1259
AsuNHI GCTAGC 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 2 cut(s) 175, 775
BalI TGGCCA 1 cut(s) 665
BanII GRGCYC 2 cut(s) 681, 1412
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 4 cut(s) 596, 636, 681, 1032
BbvCI CCTCAGC 1 cut(s) 415
BbvI GCAGC 9 cut(s) 18, 121, 300, 303, 745, 953, 1183, 1320, 1335
BccI CCATC 8 cut(s) 659, 704, 729, 741, 838, 1277, 1299, 1489
BceAI ACGGC 5 cut(s) 79, 404, 1010, 1281, 1407
BcgI CGANNNNNNTGC 4 cut(s) 737, 771, 1025, 1059
BciT130I CCWGG 3 cut(s) 11, 131, 210
BcnI CCSGG 4 cut(s) 139, 197, 959, 1137
BcoDI GTCTC 3 cut(s) 346, 623, 1014
BfaI CTAG 4 cut(s) 38, 453, 504, 1513
BfmI CTRYAG 1 cut(s) 317
BfuAI ACCTGC 2 cut(s) 210, 259
BglII AGATCT 2 cut(s) 26, 455
Bme1390I CCNGG 7 cut(s) 11, 131, 139, 197, 210, 959, 1137
Bme18I GGWCC 2 cut(s) 175, 775
BmeRI GACNNNNNGTC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 4 cut(s) 170, 175, 775, 965
BmiI GGNNCC 2 cut(s) 143, 177
BmrFI CCNGG 7 cut(s) 11, 131, 139, 197, 210, 959, 1137
BmrI ACTGGG 1 cut(s) 1389
BmsI GCATC 2 cut(s) 135, 705
BmtI GCTAGC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 1389
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 2 cut(s) 415, 1166
Bpu14I TTCGAA 2 cut(s) 1096, 1259
BpuMI CCSGG 4 cut(s) 139, 197, 959, 1137
BsaHI GRCGYC 2 cut(s) 242, 521
BsaI GGTCTC 2 cut(s) 346, 623
BsaJI CCNNGG 3 cut(s) 209, 368, 1389
BsaWI WCCGGW 3 cut(s) 153, 277, 1012
BsaXI ACNNNNNCTCC 2 cut(s) 1484, 1514
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 380, 628, 751, 862, 1108, 1342
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 879, 1384
Bse3DI GCAATG 3 cut(s) 406, 479, 990
BseAI TCCGGA 2 cut(s) 153, 1012
BseBI CCWGG 3 cut(s) 11, 131, 210
BseDI CCNNGG 3 cut(s) 209, 368, 1389
BseGI GGATG 4 cut(s) 126, 261, 823, 1385
BseLI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 751, 862, 1108, 1342
BseMI GCAATG 3 cut(s) 406, 479, 990
BseMII CTCAG 4 cut(s) 368, 429, 503, 1180
BseNI ACTGG 2 cut(s) 879, 1384
BseRI GAGGAG 2 cut(s) 44, 1022
BseXI GCAGC 9 cut(s) 18, 121, 300, 303, 745, 953, 1183, 1320, 1335
BseYI CCCAGC 1 cut(s) 962
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 3 cut(s) 116, 1213, 1215
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 8 cut(s) 66, 172, 373, 665, 855, 967, 1025, 1268
BshTI ACCGGT 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 4 cut(s) 596, 636, 681, 1032
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 959, 1013, 1137
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 7 cut(s) 185, 380, 628, 751, 862, 1108, 1342
BsmAI GTCTC 3 cut(s) 346, 623, 1014
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 8 cut(s) 66, 172, 373, 665, 855, 967, 1025, 1268
Bso31I GGTCTC 2 cut(s) 346, 623
BsoBI CYCGRG 1 cut(s) 770
Bsp119I TTCGAA 2 cut(s) 1096, 1259
Bsp1286I GDGCHC 5 cut(s) 596, 636, 681, 1032, 1412
Bsp13I TCCGGA 2 cut(s) 153, 1012
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
BspANI GGCC 8 cut(s) 66, 172, 373, 665, 855, 967, 1025, 1268
BspCNI CTCAG 4 cut(s) 367, 428, 502, 1179
BspEI TCCGGA 2 cut(s) 153, 1012
BspFNI CGCG 3 cut(s) 116, 1213, 1215
BspLI GGNNCC 2 cut(s) 143, 177
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 2 cut(s) 210, 259
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 1472
BspQI GCTCTTC 2 cut(s) 669, 1417
BspT104I TTCGAA 2 cut(s) 1096, 1259
BspTNI GGTCTC 2 cut(s) 346, 623
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 3 cut(s) 406, 479, 990
BsrFI RCCGGY 1 cut(s) 277
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 879, 1384
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 3 cut(s) 209, 368, 1389
BssMI GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
BssNI GRCGYC 2 cut(s) 242, 521
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 11, 131, 210
Bst4CI ACNGT 1 cut(s) 1066
Bst6I CTCTTC 4 cut(s) 152, 669, 1124, 1417
BstACI GRCGYC 2 cut(s) 242, 521
BstAPI GCANNNNNTGC 1 cut(s) 571
BstAUI TGTACA 1 cut(s) 327
BstBI TTCGAA 2 cut(s) 1096, 1259
BstC8I GCNNGC 7 cut(s) 170, 505, 636, 703, 801, 969, 973
BstDEI CTNAG 4 cut(s) 354, 415, 489, 1166
BstDSI CCRYGG 1 cut(s) 1389
BstF5I GGATG 4 cut(s) 126, 261, 823, 1385
BstFNI CGCG 3 cut(s) 116, 1213, 1215
BstHHI GCGC 2 cut(s) 118, 1215
BstKTI GATC 7 cut(s) 29, 427, 458, 769, 1300, 1435, 1480
BstMAI GTCTC 3 cut(s) 346, 623, 1014
BstMBI GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 832, 968, 1221, 1317, 1320, 1332
BstNI CCWGG 3 cut(s) 11, 131, 210
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 7 cut(s) 9, 129, 137, 195, 208, 957, 1135
BstSFI CTRYAG 1 cut(s) 317
BstUI CGCG 3 cut(s) 116, 1213, 1215
BstV1I GCAGC 9 cut(s) 18, 121, 300, 303, 745, 953, 1183, 1320, 1335
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 26, 455
BstYI RGATCY 2 cut(s) 26, 455
BsuRI GGCC 8 cut(s) 66, 172, 373, 665, 855, 967, 1025, 1268
BtgI CCRYGG 1 cut(s) 1389
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 4 cut(s) 126, 261, 823, 1385
BtsI GCAGTG 1 cut(s) 1321
BtsIMutI CAGTG 3 cut(s) 82, 872, 1321
BveI ACCTGC 2 cut(s) 210, 259
Cac8I GCNNGC 7 cut(s) 170, 505, 636, 703, 801, 969, 973
CaiI CAGNNNCTG 1 cut(s) 1173
CfoI GCGC 2 cut(s) 118, 1215
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 4 cut(s) 170, 175, 775, 965
CseI GACGC 2 cut(s) 510, 1153
Csp6I GTAC 4 cut(s) 228, 295, 328, 1492
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 9 cut(s) 362, 508, 571, 751, 838, 1018, 1043, 1457, 1505
CviQI GTAC 4 cut(s) 228, 295, 328, 1492
DdeI CTNAG 4 cut(s) 354, 415, 489, 1166
DpnI GATC 7 cut(s) 28, 426, 457, 768, 1299, 1434, 1479
DpnII GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
DrdI GACNNNNNNGTC 1 cut(s) 1055
DriI GACNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 1055
EaeI YGGCCR 4 cut(s) 64, 663, 1023, 1266
Eam1104I CTCTTC 4 cut(s) 152, 669, 1124, 1417
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 4 cut(s) 152, 669, 1124, 1417
EciI GGCGGA 1 cut(s) 671
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 2 cut(s) 373, 855
Eco24I GRGCYC 2 cut(s) 681, 1412
Eco31I GGTCTC 2 cut(s) 346, 623
Eco47I GGWCC 2 cut(s) 175, 775
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 58, 73
Eco88I CYCGRG 1 cut(s) 770
EcoICRI GAGCTC 1 cut(s) 679
EcoRII CCWGG 3 cut(s) 9, 129, 208
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 681, 1412
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 9 cut(s) 365, 511, 574, 754, 841, 1021, 1046, 1460, 1508
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 1 cut(s) 19
FatI CATG 9 cut(s) 361, 507, 570, 750, 837, 1017, 1042, 1456, 1504
FauI CCCGC 2 cut(s) 161, 630
FblI GTMKAC 3 cut(s) 239, 1068, 1462
FokI GGATG 4 cut(s) 113, 268, 830, 1372
FriOI GRGCYC 2 cut(s) 681, 1412
FspBI CTAG 4 cut(s) 38, 453, 504, 1513
GlaI GCGC 2 cut(s) 117, 1214
GsaI CCCAGC 1 cut(s) 966
HaeIII GGCC 8 cut(s) 66, 172, 373, 665, 855, 967, 1025, 1268
HapII CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 959, 1013, 1137
HgaI GACGC 2 cut(s) 510, 1153
HhaI GCGC 2 cut(s) 118, 1215
Hin1I GRCGYC 2 cut(s) 242, 521
Hin1II CATG 9 cut(s) 365, 511, 574, 754, 841, 1021, 1046, 1460, 1508
Hin6I GCGC 2 cut(s) 116, 1213
HinP1I GCGC 2 cut(s) 116, 1213
HincII GTYRAC 3 cut(s) 240, 952, 1069
HindII GTYRAC 3 cut(s) 240, 952, 1069
HindIII AAGCTT 1 cut(s) 921
HinfI GANTC 6 cut(s) 17, 784, 809, 1074, 1346, 1366
HpaI GTTAAC 1 cut(s) 952
HpaII CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 959, 1013, 1137
HphI GGTGA 6 cut(s) 76, 292, 590, 716, 728, 853
Hpy166II GTNNAC 6 cut(s) 112, 240, 283, 952, 1069, 1463
Hpy188I TCNGA 7 cut(s) 357, 492, 817, 938, 1000, 1061, 1111
Hpy8I GTNNAC 6 cut(s) 112, 240, 283, 952, 1069, 1463
HpyAV CCTTC 6 cut(s) 82, 97, 192, 656, 845, 1214
HpyCH4III ACNGT 1 cut(s) 1066
HpyCH4IV ACGT 4 cut(s) 230, 242, 590, 657
HpyCH4V TGCA 7 cut(s) 126, 219, 319, 411, 479, 574, 1235
HpyF10VI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 832, 968, 1221, 1317, 1320, 1332
HpyF3I CTNAG 4 cut(s) 354, 415, 489, 1166
HpySE526I ACGT 4 cut(s) 230, 242, 590, 657
Hsp92I GRCGYC 2 cut(s) 242, 521
Hsp92II CATG 9 cut(s) 365, 511, 574, 754, 841, 1021, 1046, 1460, 1508
HspAI GCGC 2 cut(s) 116, 1213
Kpn2I TCCGGA 2 cut(s) 153, 1012
KspAI GTTAAC 1 cut(s) 952
Kzo9I GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
LguI GCTCTTC 2 cut(s) 669, 1417
LmnI GCTCC 5 cut(s) 141, 684, 938, 1035, 1127
Lsp1109I GCAGC 9 cut(s) 18, 121, 300, 303, 745, 953, 1183, 1320, 1335
LweI GCATC 2 cut(s) 135, 705
MaeI CTAG 4 cut(s) 38, 453, 504, 1513
MaeII ACGT 4 cut(s) 230, 242, 590, 657
MaeIII GTNAC 4 cut(s) 82, 243, 1075, 1286
MalI GATC 7 cut(s) 28, 426, 457, 768, 1299, 1434, 1479
MbiI CCGCTC 1 cut(s) 708
MboI GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 2 cut(s) 26, 455
MhlI GDGCHC 5 cut(s) 596, 636, 681, 1032, 1412
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 5 cut(s) 262, 376, 497, 1240, 1252
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 3 cut(s) 11, 803, 1083
Mox20I TGGCCA 1 cut(s) 665
MroI TCCGGA 2 cut(s) 153, 1012
MroXI GAANNNNTTC 2 cut(s) 161, 1185
MscI TGGCCA 1 cut(s) 665
MseI TTAA 2 cut(s) 951, 1338
MslI CAYNNNNRTG 3 cut(s) 842, 1455, 1503
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 3 cut(s) 333, 971, 1311
MspI CCGG 9 cut(s) 139, 154, 173, 197, 278, 626, 959, 1013, 1137
MspR9I CCNGG 7 cut(s) 11, 131, 139, 197, 210, 959, 1137
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 3 cut(s) 11, 131, 210
MvnI CGCG 3 cut(s) 116, 1213, 1215
MwoI GCNNNNNNNGC 9 cut(s) 571, 631, 640, 832, 968, 1221, 1317, 1320, 1332
NciI CCSGG 4 cut(s) 139, 197, 959, 1137
NdeII GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 9 cut(s) 365, 511, 574, 754, 841, 1021, 1046, 1460, 1508
NlaIV GGNNCC 2 cut(s) 143, 177
NmeAIII GCCGAG 1 cut(s) 932
NmuCI GTSAC 4 cut(s) 82, 243, 1075, 1286
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 2 cut(s) 1096, 1259
PaeR7I CTCGAG 1 cut(s) 770
PceI AGGCCT 2 cut(s) 373, 855
PciSI GCTCTTC 2 cut(s) 669, 1417
PcsI WCGNNNNNNNCGW 6 cut(s) 212, 230, 236, 239, 796, 942
PdmI GAANNNNTTC 2 cut(s) 161, 1185
PfeI GAWTC 3 cut(s) 784, 1346, 1366
PflFI GACNNNGTC 1 cut(s) 1073
PflMI CCANNNNNTGG 1 cut(s) 751
PfoI TCCNGGA 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 277
PleI GAGTC 3 cut(s) 11, 803, 1082
PpsI GAGTC 3 cut(s) 11, 803, 1082
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 3 cut(s) 9, 129, 208
PspFI CCCAGC 1 cut(s) 962
PspGI CCWGG 3 cut(s) 9, 129, 208
PspN4I GGNNCC 2 cut(s) 143, 177
PspPI GGNCC 4 cut(s) 170, 175, 775, 965
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 1173
PsuI RGATCY 2 cut(s) 26, 455
PsyI GACNNNGTC 1 cut(s) 1073
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 4 cut(s) 229, 296, 329, 1493
RsaNI GTAC 4 cut(s) 228, 295, 328, 1492
RseI CAYNNNNRTG 3 cut(s) 842, 1455, 1503
SacI GAGCTC 1 cut(s) 681
SalI GTCGAC 2 cut(s) 238, 1067
SapI GCTCTTC 2 cut(s) 669, 1417
SaqAI TTAA 2 cut(s) 951, 1338
Sau3AI GATC 7 cut(s) 26, 424, 455, 766, 1297, 1432, 1477
Sau96I GGNCC 4 cut(s) 170, 175, 775, 965
SchI GAGTC 3 cut(s) 11, 803, 1083
ScrFI CCNGG 7 cut(s) 11, 131, 139, 197, 210, 959, 1137
SduI GDGCHC 5 cut(s) 596, 636, 681, 1032, 1412
SfaNI GCATC 2 cut(s) 135, 705
SfcI CTRYAG 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 770
SfuI TTCGAA 2 cut(s) 1096, 1259
SgrDI CGTCGACG 2 cut(s) 238, 1067
SinI GGWCC 2 cut(s) 175, 775
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 3 cut(s) 842, 1455, 1503
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 5 cut(s) 262, 376, 497, 1240, 1252
SseBI AGGCCT 2 cut(s) 373, 855
SspI AATATT 1 cut(s) 1330
SspMI CTAG 4 cut(s) 38, 453, 504, 1513
SstI GAGCTC 1 cut(s) 681
StuI AGGCCT 2 cut(s) 373, 855
StyD4I CCNGG 7 cut(s) 9, 129, 137, 195, 208, 957, 1135
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 1066
TaiI ACGT 4 cut(s) 233, 245, 593, 660
TaqII GACCGA 1 cut(s) 277
TasI AATT 5 cut(s) 262, 376, 497, 1240, 1252
TatI WGTACW 1 cut(s) 327
TauI GCSGC 6 cut(s) 449, 452, 708, 764, 1314, 1323
TfiI GAWTC 3 cut(s) 784, 1346, 1366
Tru1I TTAA 2 cut(s) 951, 1338
Tru9I TTAA 2 cut(s) 951, 1338
TscAI CASTG 3 cut(s) 82, 879, 1321
TseFI GTSAC 4 cut(s) 82, 243, 1075, 1286
TseI GCWGC 9 cut(s) 6, 134, 313, 316, 758, 941, 1196, 1308, 1323
Tsp45I GTSAC 4 cut(s) 82, 243, 1075, 1286
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 1086
TspRI CASTG 3 cut(s) 82, 879, 1321
Tth111I GACNNNGTC 1 cut(s) 1073
Van91I CCANNNNNTGG 1 cut(s) 751
VpaK11BI GGWCC 2 cut(s) 175, 775
XceI RCATGY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XhoI CTCGAG 1 cut(s) 770
XmiI GTMKAC 3 cut(s) 239, 1068, 1462
XmnI GAANNNNTTC 2 cut(s) 161, 1185
XspI CTAG 4 cut(s) 38, 453, 504, 1513
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.