Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018872

Physical Location & Seq

Genomic Coordinates Reverse (-)

38614410 .. 38616192

Gene Structure 1783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATTACTCCAGCGGCCTTCAGAACTCTCACAATATCATAAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCAGTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACCACCATTACTGGCATTCATGAGCTGGAGAAGGGTGGATATCGTGGAATATTGATGAATGCAGTTATTGCTGCTGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

150

Amino Acids

15.3

Weight (kDa)

5.06

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P5CR_dimer	PF14748	43 - 147	9e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06311
rosa_chinensis	RchiOBHm_Chr2g0125021
rosa_multiflora	Rmu_sc0001251.1_g000011 Rmu_sc0018900.1_g000003
rosa_roxburghii	Rroxscaffold_2G00118400 Rroxscaffold_2G00118410 Rroxscaffold_2G00118430 Rroxscaffold_2G00118750
rosa_samantha	Rh2DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	226
AccII	CGCG	1 cut(s)	232
AciI	CCGC	3 cut(s)	15, 159, 230
AclWI	GGATC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	307, 337, 422
AluBI	AGCT	5 cut(s)	45, 56, 86, 316, 370
AluI	AGCT	5 cut(s)	45, 56, 86, 316, 370
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	106
AoxI	GGCC	2 cut(s)	16, 151
ApeKI	GCWGC	6 cut(s)	56, 218, 275, 416, 419, 429
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	167
BbvI	GCAGC	6 cut(s)	43, 205, 287, 403, 406, 441
BccI	CCATC	2 cut(s)	65, 200
BciT130I	CCWGG	3 cut(s)	309, 339, 424
BcoDI	GTCTC	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	3 cut(s)	251, 291, 451
BfmI	CTRYAG	2 cut(s)	189, 219
BfuAI	ACCTGC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	8 cut(s)	16, 57, 160, 219, 276, 417, 420, 430
BlsI	GCNGC	8 cut(s)	17, 58, 161, 220, 277, 418, 421, 431
Bme1390I	CCNGG	3 cut(s)	309, 339, 424
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	3 cut(s)	309, 339, 424
BmsI	GCATC	4 cut(s)	130, 263, 287, 313
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	154, 361
BseBI	CCWGG	3 cut(s)	309, 339, 424
BseGI	GGATG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	154, 361
BseRI	GAGGAG	2 cut(s)	66, 225
BseXI	GCAGC	6 cut(s)	43, 205, 287, 403, 406, 441
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	18, 153
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	2 cut(s)	360, 409
BsnI	GGCC	2 cut(s)	18, 153
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	15, 159, 230
BspANI	GGCC	2 cut(s)	18, 153
BspFNI	CGCG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	154, 361
BssMI	GATC	1 cut(s)	98
Bst2UI	CCWGG	3 cut(s)	309, 339, 424
Bst4CI	ACNGT	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 194, 284, 413
BstNI	CCWGG	3 cut(s)	309, 339, 424
BstSCI	CCNGG	3 cut(s)	307, 337, 422
BstSFI	CTRYAG	2 cut(s)	189, 219
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	6 cut(s)	43, 205, 287, 403, 406, 441
BsuRI	GGCC	2 cut(s)	18, 153
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	2 cut(s)	169, 249
BtsIMutI	CAGTG	2 cut(s)	169, 249
BveI	ACCTGC	1 cut(s)	212
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	337
CviAII	CATG	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DraIII	CACNNNGTG	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	307, 337, 422
EcoRV	GATATC	1 cut(s)	386
FaeI	CATG	1 cut(s)	368
FaiI	YATR	8 cut(s)	41, 175, 177, 179, 181, 191, 284, 366
FatI	CATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	8 cut(s)	16, 57, 160, 219, 276, 417, 420, 430
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	8 cut(s)	16, 57, 160, 219, 276, 417, 420, 430
FspBI	CTAG	3 cut(s)	251, 291, 451
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	8 cut(s)	16, 57, 160, 219, 276, 417, 420, 430
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	18, 153
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	43
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	29, 370
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	6 cut(s)	59, 143, 173, 221, 242, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 194, 284, 413
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	53, 272
Lsp1109I	GCAGC	6 cut(s)	43, 205, 287, 403, 406, 441
LweI	GCATC	4 cut(s)	130, 263, 287, 313
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	3 cut(s)	251, 291, 451
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MluCI	AATT	3 cut(s)	89, 131, 144
MnlI	CCTC	3 cut(s)	44, 187, 203
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	3 cut(s)	309, 339, 424
Mva1269I	GAATGC	2 cut(s)	360, 409
MvaI	CCWGG	3 cut(s)	309, 339, 424
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	159, 194, 284, 413
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	364
PctI	GAATGC	2 cut(s)	360, 409
PkrI	GCNGC	8 cut(s)	17, 58, 161, 220, 277, 418, 421, 431
Psp6I	CCWGG	3 cut(s)	307, 337, 422
PspGI	CCWGG	3 cut(s)	307, 337, 422
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	337, 369
PstI	CTGCAG	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	8 cut(s)	16, 57, 160, 219, 276, 417, 420, 430
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	309, 339, 424
SetI	ASST	8 cut(s)	47, 58, 88, 226, 313, 318, 340, 372
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	4 cut(s)	130, 263, 287, 313
SfcI	CTRYAG	2 cut(s)	189, 219
SinI	GGWCC	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	3 cut(s)	89, 131, 144
SsiI	CCGC	3 cut(s)	15, 159, 230
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	3 cut(s)	251, 291, 451
StyD4I	CCNGG	3 cut(s)	307, 337, 422
TaaI	ACNGT	1 cut(s)	265
TasI	AATT	3 cut(s)	89, 131, 144
TauI	GCSGC	2 cut(s)	18, 162
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	2 cut(s)	169, 249
TseI	GCWGC	6 cut(s)	56, 218, 275, 416, 419, 429
TspDTI	ATGAA	3 cut(s)	141, 353, 416
TspRI	CASTG	2 cut(s)	169, 249
VpaK11BI	GGWCC	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	3 cut(s)	251, 291, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.