Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018872

Physical Location & Seq

Genomic Coordinates Forward (+)

49868995 .. 49878593

Gene Structure 9599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCCCCGAAACAATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGGTTCATCGGAGCGAGGTAAAATGGCGGAGAGCATCTCCGGAGGAGTCGTCCGATCAGGCATTCTCCCCCCGATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGCCAAGCATTCGAGTCCTTCGGCGTCCACCTCCTCCCTCGCAACGACGACGATTGGGCCGGTCATGTACCGATTTATCGGGGTAATGCCTAATACTCCTTCTGCTGTTGGTGTTGCAGCATCGGTTTTGAGCTTGGGAGGAGCTGCAATAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCGGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGGAGGTCTACCACGAGAACTTGCATTGAGTCTAGCATCTCAAACTAAATCACTTCGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

176

Amino Acids

18.15

Weight (kDa)

9.84

Isoelectric Point (pI)

70.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P5CR_dimer	PF14748	126 - 171	7.4e-14	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06311
rosa_chinensis	RchiOBHm_Chr2g0125021
rosa_multiflora	Rmu_sc0001251.1_g000011 Rmu_sc0018900.1_g000003
rosa_roxburghii	Rroxscaffold_2G00118400 Rroxscaffold_2G00118410 Rroxscaffold_2G00118430 Rroxscaffold_2G00118750
rosa_samantha	Rh2DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	3 cut(s)	80, 408, 411
AclWI	GGATC	1 cut(s)	355
AcyI	GRCGYC	2 cut(s)	162, 185
AfaI	GTAC	2 cut(s)	46, 230
AluBI	AGCT	4 cut(s)	51, 294, 305, 335
AluI	AGCT	4 cut(s)	51, 294, 305, 335
Alw26I	GTCTC	2 cut(s)	34, 318
AlwI	GGATC	1 cut(s)	355
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	218, 400
ApeKI	GCWGC	2 cut(s)	278, 305
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	218, 416
AvaII	GGWCC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	290, 292
BccI	CCATC	3 cut(s)	37, 314, 449
BcoDI	GTCTC	2 cut(s)	34, 318
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	279, 306, 409
BlsI	GCNGC	3 cut(s)	280, 307, 410
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	218, 416
BmsI	GCATC	5 cut(s)	96, 140, 290, 379, 512
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpmI	CTGGAG	2 cut(s)	132, 489
Bpu10I	CCTNAGC	1 cut(s)	404
BsaHI	GRCGYC	2 cut(s)	162, 185
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	403
BseAI	TCCGGA	1 cut(s)	92
BseGI	GGATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	4 cut(s)	111, 184, 315, 474
BseXI	GCAGC	2 cut(s)	290, 292
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	220, 402
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	93, 221
BsmAI	GTCTC	2 cut(s)	34, 318
BsmBI	CGTCTC	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	114, 169
BsnI	GGCC	2 cut(s)	220, 402
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	107, 126, 347
BspACI	CCGC	3 cut(s)	80, 408, 411
BspANI	GGCC	2 cut(s)	220, 402
BspEI	TCCGGA	1 cut(s)	92
BspPI	GGATC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	220
BssMI	GATC	3 cut(s)	107, 126, 347
BssNI	GRCGYC	2 cut(s)	162, 185
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
BstACI	GRCGYC	2 cut(s)	162, 185
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	110, 129, 350
BstMAI	GTCTC	2 cut(s)	34, 318
BstMBI	GATC	3 cut(s)	107, 126, 347
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 443
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	290, 292
BsuRI	GGCC	2 cut(s)	220, 402
BtsCI	GGATG	1 cut(s)	29
CfoI	GCGC	1 cut(s)	24
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	218, 416
CseI	GACGC	2 cut(s)	170, 174
Csp6I	GTAC	2 cut(s)	45, 229
CviAII	CATG	1 cut(s)	226
CviQI	GTAC	2 cut(s)	45, 229
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	3 cut(s)	109, 128, 349
DpnII	GATC	3 cut(s)	107, 126, 347
EciI	GGCGGA	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	229
FaiI	YATR	6 cut(s)	227, 424, 426, 428, 430, 440
FatI	CATG	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	279, 306, 409
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	279, 306, 409
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	3 cut(s)	279, 306, 409
GsuI	CTGGAG	2 cut(s)	132, 489
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	220, 402
HapII	CCGG	2 cut(s)	93, 221
HgaI	GACGC	2 cut(s)	170, 174
HhaI	GCGC	1 cut(s)	24
Hin1I	GRCGYC	2 cut(s)	162, 185
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	99, 175, 496
HpaII	CCGG	2 cut(s)	93, 221
Hpy166II	GTNNAC	2 cut(s)	189, 476
Hpy188I	TCNGA	3 cut(s)	64, 107, 525
Hpy188III	TCNNGA	2 cut(s)	33, 93
Hpy8I	GTNNAC	2 cut(s)	189, 476
Hpy99I	CGWCG	4 cut(s)	39, 164, 211, 214
HpyAV	CCTTC	2 cut(s)	189, 270
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	5 cut(s)	278, 308, 392, 422, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 443
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	2 cut(s)	162, 185
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	107, 126, 347
LmnI	GCTCC	2 cut(s)	64, 302
LpnPI	CCDG	7 cut(s)	96, 106, 162, 234, 384, 432, 453
Lsp1109I	GCAGC	2 cut(s)	290, 292
LweI	GCATC	5 cut(s)	96, 140, 290, 379, 512
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	43
MalI	GATC	3 cut(s)	109, 128, 349
MboI	GATC	3 cut(s)	107, 126, 347
MluCI	AATT	3 cut(s)	338, 380, 393
MlyI	GAGTC	3 cut(s)	108, 184, 505
MroI	TCCGGA	1 cut(s)	92
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	93, 221
Mva1269I	GAATGC	2 cut(s)	114, 169
MwoI	GCNNNNNNNGC	2 cut(s)	408, 443
NdeII	GATC	3 cut(s)	107, 126, 347
NlaIII	CATG	1 cut(s)	229
PctI	GAATGC	2 cut(s)	114, 169
PkrI	GCNGC	3 cut(s)	280, 307, 410
Ple19I	CGATCG	1 cut(s)	129
PleI	GAGTC	3 cut(s)	107, 183, 504
PpsI	GAGTC	3 cut(s)	107, 183, 504
PspPI	GGNCC	2 cut(s)	218, 416
PvuI	CGATCG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	46, 230
RsaNI	GTAC	2 cut(s)	45, 229
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	279, 306, 409
Sau3AI	GATC	3 cut(s)	107, 126, 347
Sau96I	GGNCC	2 cut(s)	218, 416
SchI	GAGTC	3 cut(s)	108, 184, 505
SetI	ASST	9 cut(s)	46, 53, 73, 142, 194, 296, 307, 337, 475
SfaNI	GCATC	5 cut(s)	96, 140, 290, 379, 512
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	3 cut(s)	338, 380, 393
SsiI	CCGC	3 cut(s)	80, 408, 411
SspMI	CTAG	1 cut(s)	500
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	159, 173
TasI	AATT	3 cut(s)	338, 380, 393
TauI	GCSGC	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	2 cut(s)	278, 305
TspDTI	ATGAA	2 cut(s)	48, 390
TspGWI	ACGGA	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.