Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001251.1

Orthogroup ID

OG0018872

Physical Location & Seq

Genomic Coordinates Reverse (-)

27081 .. 29817

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001251.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggaggcgctacccatcccgacggagacgtacaagcttgggttcatcggagcaggtaaactggcggagagcatcgccagaggagtattaggagcagcatctatggctactagttccgggaagcatccaggtcagctaaaagatgatgtaacatcacctggtggaactaccattactggcattcatgagctggagaagggtggatttcgtggaatattgatgaatgcagtcgttgctgctgccaggcgcagccgagaactttcacagagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

90

Amino Acids

9.24

Weight (kDa)

9.3

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06311
rosa_chinensis	RchiOBHm_Chr2g0125021
rosa_multiflora	Rmu_sc0001251.1_g000011 Rmu_sc0018900.1_g000003
rosa_roxburghii	Rroxscaffold_2G00118400 Rroxscaffold_2G00118410 Rroxscaffold_2G00118430 Rroxscaffold_2G00118750
rosa_samantha	Rh2DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	32
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	127, 157, 242
AluBI	AGCT	4 cut(s)	37, 136, 190, 270
AluI	AGCT	4 cut(s)	37, 136, 190, 270
Alw26I	GTCTC	1 cut(s)	20
ApeKI	GCWGC	4 cut(s)	95, 236, 239, 249
AspLEI	GCGC	2 cut(s)	10, 249
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	107, 223, 226, 261
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	129, 159, 244
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 271
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	4 cut(s)	96, 237, 240, 250
BlsI	GCNGC	4 cut(s)	97, 238, 241, 251
Bme1390I	CCNGG	4 cut(s)	118, 129, 159, 244
BmrFI	CCNGG	4 cut(s)	118, 129, 159, 244
BmsI	GCATC	3 cut(s)	81, 107, 133
BpmI	CTGGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	66, 181
BseBI	CCWGG	3 cut(s)	129, 159, 244
BseGI	GGATG	2 cut(s)	15, 124
BseNI	ACTGG	2 cut(s)	66, 181
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	107, 223, 226, 261
BsiSI	CCGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	2 cut(s)	180, 229
BspACI	CCGC	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	66, 181
Bst2UI	CCWGG	3 cut(s)	129, 159, 244
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	15, 124
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 249
BstMAI	GTCTC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 233
BstNI	CCWGG	3 cut(s)	129, 159, 244
BstSCI	CCNGG	4 cut(s)	116, 127, 157, 242
BstV1I	GCAGC	4 cut(s)	107, 223, 226, 261
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	15, 124
BveI	ACCTGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	2 cut(s)	10, 249
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	6 cut(s)	37, 107, 136, 190, 252, 270
CviKI_1	RGCY	6 cut(s)	37, 107, 136, 190, 252, 270
CviQI	GTAC	1 cut(s)	31
DraIII	CACNNNGTG	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	80
EcoRII	CCWGG	3 cut(s)	127, 157, 242
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	188
FaiI	YATR	2 cut(s)	104, 186
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	96, 237, 240, 250
FokI	GGATG	2 cut(s)	2, 111
Fsp4HI	GCNGC	4 cut(s)	96, 237, 240, 250
FspBI	CTAG	2 cut(s)	111, 271
GlaI	GCGC	2 cut(s)	9, 248
GluI	GCNGC	4 cut(s)	96, 237, 240, 250
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	10, 249
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	2 cut(s)	8, 247
HinP1I	GCGC	2 cut(s)	8, 247
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	2 cut(s)	19, 185
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 233
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	2 cut(s)	8, 247
LmnI	GCTCC	2 cut(s)	50, 92
Lsp1109I	GCAGC	4 cut(s)	107, 223, 226, 261
LweI	GCATC	3 cut(s)	81, 107, 133
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	2 cut(s)	111, 271
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	74
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	4 cut(s)	118, 129, 159, 244
Mva1269I	GAATGC	2 cut(s)	180, 229
MvaI	CCWGG	3 cut(s)	129, 159, 244
MwoI	GCNNNNNNNGC	2 cut(s)	104, 233
NciI	CCSGG	1 cut(s)	118
NlaIII	CATG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	184
PctI	GAATGC	2 cut(s)	180, 229
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	97, 238, 241, 251
Psp6I	CCWGG	3 cut(s)	127, 157, 242
PspGI	CCWGG	3 cut(s)	127, 157, 242
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	4 cut(s)	96, 237, 240, 250
ScrFI	CCNGG	4 cut(s)	118, 129, 159, 244
SetI	ASST	8 cut(s)	32, 39, 58, 133, 138, 160, 192, 272
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	81, 107, 133
SpeI	ACTAGT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	2 cut(s)	111, 271
StyD4I	CCNGG	4 cut(s)	116, 127, 157, 242
TaiI	ACGT	1 cut(s)	32
TseI	GCWGC	4 cut(s)	95, 236, 239, 249
TspDTI	ATGAA	3 cut(s)	34, 173, 236
TspGWI	ACGGA	1 cut(s)	38
XspI	CTAG	2 cut(s)	111, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.