Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018900.1

Orthogroup ID

OG0018872

Physical Location & Seq

Genomic Coordinates Reverse (-)

29529 .. 30559

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018900.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 349 bp

aggcaagatatggaaagccgatgaaaagttctttgatgcaattactggcctaagtggcagtggtcctgcatatatatatttggctatagaggctttggcagatggaggagttgctgcaggtctaccacgtgaacttgcattgggtctagcatctcaaactgtattaggagcagcatctatggctactagctctgggaagcatccaggtcagctaaaagatgatgtaacatcaccaggtggaactaccattgctggcattcatgaactggagaagggtggatttcgtggaatattgatgaatgcagttgttgctgctgccaggcgcagccgagagctttcacagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

115

Amino Acids

11.7

Weight (kDa)

6.94

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06311
rosa_chinensis	RchiOBHm_Chr2g0125021
rosa_multiflora	Rmu_sc0001251.1_g000011 Rmu_sc0018900.1_g000003
rosa_roxburghii	Rroxscaffold_2G00118400 Rroxscaffold_2G00118410 Rroxscaffold_2G00118430 Rroxscaffold_2G00118750
rosa_samantha	Rh2DG340200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	237
AjnI	CCWGG	3 cut(s)	203, 233, 318
AluBI	AGCT	3 cut(s)	190, 212, 335
AluI	AGCT	3 cut(s)	190, 212, 335
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	5 cut(s)	114, 171, 312, 315, 325
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	63
BbrPI	CACGTG	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	101, 183, 299, 302, 337
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	205, 235, 320
BfaI	CTAG	3 cut(s)	147, 187, 347
BfmI	CTRYAG	2 cut(s)	85, 115
BfuAI	ACCTGC	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	55
BisI	GCNGC	5 cut(s)	115, 172, 313, 316, 326
BlsI	GCNGC	5 cut(s)	116, 173, 314, 317, 327
Bme1390I	CCNGG	3 cut(s)	205, 235, 320
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	63
BmrFI	CCNGG	3 cut(s)	205, 235, 320
BmsI	GCATC	4 cut(s)	26, 159, 183, 209
BpmI	CTGGAG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	50, 271
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	205, 235, 320
BseGI	GGATG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	50, 271
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	5 cut(s)	101, 183, 299, 302, 337
BshFI	GGCC	1 cut(s)	49
BsmI	GAATGC	2 cut(s)	256, 305
BsnI	GGCC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	260
BspMAI	CTGCAG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	50, 271
Bst2UI	CCWGG	3 cut(s)	205, 235, 320
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 90, 180, 309
BstNI	CCWGG	3 cut(s)	205, 235, 320
BstSCI	CCNGG	3 cut(s)	203, 233, 318
BstSFI	CTRYAG	2 cut(s)	85, 115
BstV1I	GCAGC	5 cut(s)	101, 183, 299, 302, 337
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	260
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	63
CsiI	ACCWGGT	1 cut(s)	233
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	9 cut(s)	18, 49, 84, 93, 183, 190, 212, 328, 335
CviKI_1	RGCY	9 cut(s)	18, 49, 84, 93, 183, 190, 212, 328, 335
DdeI	CTNAG	1 cut(s)	51
DraIII	CACNNNGTG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	63
Eco72I	CACGTG	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	203, 233, 318
FaeI	CATG	1 cut(s)	264
FaiI	YATR	8 cut(s)	11, 71, 73, 75, 77, 87, 180, 262
FatI	CATG	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	115, 172, 313, 316, 326
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	5 cut(s)	115, 172, 313, 316, 326
FspBI	CTAG	3 cut(s)	147, 187, 347
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	5 cut(s)	115, 172, 313, 316, 326
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	123, 132
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	123, 132
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	39, 69, 117, 138, 303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 90, 180, 309
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	5 cut(s)	101, 183, 299, 302, 337
LweI	GCATC	4 cut(s)	26, 159, 183, 209
MabI	ACCWGGT	1 cut(s)	233
MaeI	CTAG	3 cut(s)	147, 187, 347
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	224
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	2 cut(s)	83, 99
MspR9I	CCNGG	3 cut(s)	205, 235, 320
Mva1269I	GAATGC	2 cut(s)	256, 305
MvaI	CCWGG	3 cut(s)	205, 235, 320
MwoI	GCNNNNNNNGC	4 cut(s)	55, 90, 180, 309
NlaIII	CATG	1 cut(s)	264
PagI	TCATGA	1 cut(s)	260
PctI	GAATGC	2 cut(s)	256, 305
PkrI	GCNGC	5 cut(s)	116, 173, 314, 317, 327
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	203, 233, 318
PspCI	CACGTG	1 cut(s)	129
PspGI	CCWGG	3 cut(s)	203, 233, 318
PspPI	GGNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	119
SatI	GCNGC	5 cut(s)	115, 172, 313, 316, 326
Sau96I	GGNCC	1 cut(s)	63
ScrFI	CCNGG	3 cut(s)	205, 235, 320
SetI	ASST	7 cut(s)	122, 131, 192, 209, 214, 239, 337
SexAI	ACCWGGT	1 cut(s)	233
SfaNI	GCATC	4 cut(s)	26, 159, 183, 209
SfcI	CTRYAG	2 cut(s)	85, 115
SinI	GGWCC	1 cut(s)	63
Sse9I	AATT	1 cut(s)	40
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	147, 187, 347
StyD4I	CCNGG	3 cut(s)	203, 233, 318
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	131
TasI	AATT	1 cut(s)	40
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	5 cut(s)	114, 171, 312, 315, 325
TspDTI	ATGAA	4 cut(s)	37, 249, 277, 312
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	122
XspI	CTAG	3 cut(s)	147, 187, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.