RchiOBHm_Chr2g0126391

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018970
Physical Location & Seq
Forward (+)
40762169 .. 40763665
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49838

Sequence Viewer

Length: 228 bp
ATGGTGATGTTTAAAGATCTGACTGGAAACATTTCTTGCCTCAGGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTTGCATGTCAACTGGACCACACTTCACAATTGTTCATAAGCAGGTTGTTTTCTGGACAAAAGTGTACCATCCGAACATTAATAGCAATGGTAGTGCTATTAAAGAGCAATGGAGCCCTGCCCCGAGTCCCTGA

Protein Analysis

75

Amino Acids

8.27

Weight (kDa)

8.77

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 7 - 48 3.2e-10 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AfaI GTAC 1 cut(s) 161
AjnI CCWGG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 1 cut(s) 44
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 16, 92
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 41
BanII GRGCYC 1 cut(s) 212
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 28, 112
Bse21I CCTNAGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 187, 209
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 163
BseMI GCAATG 2 cut(s) 187, 209
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 28, 112
BshFI GGCC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 187, 209
BsrI ACTGG 2 cut(s) 28, 112
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 56, 65, 71, 100
CviJI RGCY 3 cut(s) 46, 52, 210
CviKI_1 RGCY 3 cut(s) 46, 52, 210
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 212
FaeI CATG 4 cut(s) 59, 68, 74, 103
FaiI YATR 5 cut(s) 57, 66, 72, 101, 132
FaqI GGGAC 1 cut(s) 207
FatI CATG 4 cut(s) 55, 64, 70, 99
FokI GGATG 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 4 cut(s) 59, 68, 74, 103
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 220
HphI GGTGA 2 cut(s) 16, 92
Hpy166II GTNNAC 2 cut(s) 105, 160
Hpy188I TCNGA 2 cut(s) 21, 168
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 105, 160
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 4 cut(s) 59, 68, 74, 103
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 9, 28, 33, 60, 93, 122, 133
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 1 cut(s) 123
MnlI CCTC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 3 cut(s) 12, 174, 195
MslI CAYNNNNRTG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 48
NdeII GATC 1 cut(s) 16
NlaIII CATG 4 cut(s) 59, 68, 74, 103
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 103
PceI AGGCCT 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 12, 174, 195
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 212
SetI ASST 1 cut(s) 141
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 46
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 95
TasI AATT 1 cut(s) 123
Tru1I TTAA 3 cut(s) 12, 174, 195
Tru9I TTAA 3 cut(s) 12, 174, 195
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 44, 59, 119
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 174
XceI RCATGY 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.