Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018970

Physical Location & Seq

Genomic Coordinates Forward (+)

8155752 .. 8162483

Gene Structure 6732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGAGTTGAGACTTTTCGATGGGGAGCGTTTTGTCTACTTCTGGGCTTTAAGCCGACCTTGGTTGGATTGCATTCTAACAAATTGGAATCACCTGAGCTGAAGACCCGTATTGAGGCTTTGACAGAAATACGGGCGGCAGACGTCCTAAGTCAGAAGCACCGGGGTTATGACATTTTCTTGAATTTGATGGTGATGTTTAAAGATCTGACTGGAAACATTTCTGGCCTCAGGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTTGCATGTCAACTGGACCACACTTCACAATTGTTGATAAGCAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

128

Amino Acids

14.29

Weight (kDa)

8.93

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	70 - 112	2.9e-11	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115651 RchiOBHm_Chr2g0126391 RchiOBHm_Chr4g0402041
rosa_laevigata	RLG00000010177
rosa_roxburghii	Rroxscaffold_160G00433680 Rroxscaffold_2G00097020 Rroxscaffold_2G00128270 Rroxscaffold_7G00208410
rosa_samantha	Rh2DG101300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	100, 373
AluI	AGCT	2 cut(s)	100, 373
Alw26I	GTCTC	1 cut(s)	5
AoxI	GGCC	2 cut(s)	226, 233
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	84, 205, 281
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	2 cut(s)	15, 184
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	138, 371
BlsI	GCNGC	2 cut(s)	139, 372
Bme1390I	CCNGG	2 cut(s)	164, 237
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	2 cut(s)	164, 237
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	60, 163, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	217, 301
Bse21I	CCTNAGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	60, 163, 236
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	87, 244
BseNI	ACTGG	2 cut(s)	217, 301
BseXI	GCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	228, 235
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	228, 235
Bsp143I	GATC	2 cut(s)	205, 340
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	228, 235
BspCNI	CTCAG	2 cut(s)	88, 243
BspMI	ACCTGC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	217, 301
BssECI	CCNNGG	3 cut(s)	60, 163, 236
BssMI	GATC	2 cut(s)	205, 340
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	96, 149, 230
BstKTI	GATC	2 cut(s)	208, 343
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	2 cut(s)	205, 340
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	162, 235
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	228, 235
BveI	ACCTGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	299
CviAII	CATG	4 cut(s)	245, 254, 260, 289
CviJI	RGCY	9 cut(s)	48, 55, 100, 119, 228, 235, 241, 373, 378
CviKI_1	RGCY	9 cut(s)	48, 55, 100, 119, 228, 235, 241, 373, 378
DdeI	CTNAG	3 cut(s)	96, 149, 230
DpnI	GATC	2 cut(s)	207, 342
DpnII	GATC	2 cut(s)	205, 340
DraI	TTTAAA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	4 cut(s)	248, 257, 263, 292
FaiI	YATR	5 cut(s)	171, 246, 255, 261, 290
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	4 cut(s)	244, 253, 259, 288
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	138, 371
Fsp4HI	GCNGC	2 cut(s)	138, 371
GluI	GCNGC	2 cut(s)	138, 371
HaeIII	GGCC	2 cut(s)	228, 235
HapII	CCGG	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	248, 257, 263, 292
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	84, 205, 281
Hpy166II	GTNNAC	2 cut(s)	38, 294
Hpy188I	TCNGA	2 cut(s)	156, 210
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	38, 294
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	73, 288, 331, 365
HpyF3I	CTNAG	3 cut(s)	96, 149, 230
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	248, 257, 263, 292
Kzo9I	GATC	2 cut(s)	205, 340
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	207, 342
MboI	GATC	2 cut(s)	205, 340
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	3 cut(s)	83, 184, 312
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	109, 239
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	2 cut(s)	51, 201
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	164, 237
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	237
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	2 cut(s)	205, 340
NlaIII	CATG	4 cut(s)	248, 257, 263, 292
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	235
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	139, 372
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	51, 201
SatI	GCNGC	2 cut(s)	138, 371
Sau3AI	GATC	2 cut(s)	205, 340
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	164, 237
SetI	ASST	6 cut(s)	62, 97, 102, 147, 330, 375
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	83, 184, 312
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	2 cut(s)	162, 235
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	19, 343
TasI	AATT	3 cut(s)	83, 184, 312
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	51, 201
Tru9I	TTAA	2 cut(s)	51, 201
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	233, 248
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	184
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	220
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.