Rroxscaffold_160G00433680

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0018970
Physical Location & Seq
Reverse (-)
57796 .. 60808
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433680.1

Sequence Viewer

Length: 429 bp
ATGGTGGCTCCGGGTGGTCCAGTACTATGGTCCTCTTCGGATTCGTATAGAGACGAACGTTTCTCTACCTACTATACACGGACATCGACTCATTTAGCGAAATCAGATCTCAACATCAATTGTTTCAGACTATCAAGGTTTTATGCAAAGGAGTATTTGGGTTGTTCTTTTGCCGGTGTTCCTGGTTTGGCATTTTTAAGAAAAGGAGAGCCACATCCAGTGGAACCTGTAATTGATAGCAGCAGCTTAAATTTGATGGTGATGTTTAAAGATCTGACTGGAAACATTTCTGGCCTCAGGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTCGCATGTCAACTGGACCACACTTCACAATTGTTGATAAGCAGATTCCTCTCACTGGAACACTTGTAGACTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

142

Amino Acids

15.73

Weight (kDa)

7.85

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 92 - 129 4.1e-09 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 417
AclI AACGTT 1 cut(s) 58
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 404
AjnI CCWGG 2 cut(s) 181, 301
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 2 cut(s) 292, 299
ApeKI GCWGC 2 cut(s) 240, 243
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 17, 30, 365
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 271, 347
AvaII GGWCC 3 cut(s) 17, 30, 365
AxyI CCTNAGG 1 cut(s) 296
BbvI GCAGC 2 cut(s) 252, 255
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 183, 303
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 45
BglII AGATCT 2 cut(s) 106, 271
BisI GCNGC 2 cut(s) 241, 244
BlsI GCNGC 2 cut(s) 242, 245
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 3 cut(s) 12, 183, 303
Bme18I GGWCC 3 cut(s) 17, 30, 365
BmgT120I GGNCC 3 cut(s) 17, 30, 365
BmiI GGNNCC 2 cut(s) 9, 225
BmrFI CCNGG 3 cut(s) 12, 183, 303
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 5 cut(s) 20, 218, 283, 367, 409
Bse21I CCTNAGG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 183, 303
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 5 cut(s) 20, 218, 283, 367, 409
BseXI GCAGC 2 cut(s) 252, 255
BshFI GGCC 2 cut(s) 294, 301
BsiSI CCGG 2 cut(s) 11, 174
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 2 cut(s) 294, 301
Bsp143I GATC 2 cut(s) 106, 271
BspANI GGCC 2 cut(s) 294, 301
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 9, 225
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 5 cut(s) 20, 218, 283, 367, 409
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 2 cut(s) 106, 271
Bst2UI CCWGG 2 cut(s) 183, 303
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 2 cut(s) 109, 274
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 106, 271
BstNI CCWGG 2 cut(s) 183, 303
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 10, 181, 301
BstV1I GCAGC 2 cut(s) 252, 255
BstX2I RGATCY 2 cut(s) 106, 271
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 2 cut(s) 106, 271
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 2 cut(s) 294, 301
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 225, 402
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 17, 30, 365
Csp6I GTAC 1 cut(s) 23
CviAII CATG 4 cut(s) 311, 320, 326, 355
CviJI RGCY 6 cut(s) 8, 211, 246, 294, 301, 307
CviKI_1 RGCY 6 cut(s) 8, 211, 246, 294, 301, 307
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 108, 273
DpnII GATC 2 cut(s) 106, 271
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 17, 30, 365
Eco81I CCTNAGG 1 cut(s) 296
EcoRII CCWGG 2 cut(s) 181, 301
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 4 cut(s) 314, 323, 329, 358
FaiI YATR 8 cut(s) 28, 48, 75, 144, 312, 321, 327, 356
FatI CATG 4 cut(s) 310, 319, 325, 354
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 241, 244
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 241, 244
GluI GCNGC 2 cut(s) 241, 244
HaeIII GGCC 2 cut(s) 294, 301
HapII CCGG 2 cut(s) 11, 174
Hin1II CATG 4 cut(s) 314, 323, 329, 358
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 3 cut(s) 41, 88, 394
HpaII CCGG 2 cut(s) 11, 174
HphI GGTGA 2 cut(s) 271, 347
Hpy166II GTNNAC 2 cut(s) 360, 418
Hpy188I TCNGA 4 cut(s) 40, 106, 128, 276
Hpy8I GTNNAC 2 cut(s) 360, 418
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 4 cut(s) 314, 323, 329, 358
Kzo9I GATC 2 cut(s) 106, 271
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 2 cut(s) 252, 255
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 108, 273
MboI GATC 2 cut(s) 106, 271
MboII GAAGA 1 cut(s) 27
MfeI CAATTG 2 cut(s) 118, 378
MflI RGATCY 2 cut(s) 106, 271
MluCI AATT 4 cut(s) 118, 231, 250, 378
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 3 cut(s) 43, 305, 408
MroXI GAANNNNTTC 1 cut(s) 286
MseI TTAA 3 cut(s) 197, 248, 267
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 2 cut(s) 11, 174
MspR9I CCNGG 3 cut(s) 12, 183, 303
MunI CAATTG 2 cut(s) 118, 378
MvaI CCWGG 2 cut(s) 183, 303
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 106, 271
NlaIII CATG 4 cut(s) 314, 323, 329, 358
NlaIV GGNNCC 2 cut(s) 9, 225
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 358
PceI AGGCCT 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 41, 394
PkrI GCNGC 2 cut(s) 242, 245
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp1406I AACGTT 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 181, 301
PspGI CCWGG 2 cut(s) 181, 301
PspN4I GGNNCC 2 cut(s) 9, 225
PspPI GGNCC 3 cut(s) 17, 30, 365
PsuI RGATCY 2 cut(s) 106, 271
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 197, 248, 267
SatI GCNGC 2 cut(s) 241, 244
Sau3AI GATC 2 cut(s) 106, 271
Sau96I GGNCC 3 cut(s) 17, 30, 365
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 3 cut(s) 12, 183, 303
SetI ASST 5 cut(s) 61, 71, 140, 229, 248
SinI GGWCC 3 cut(s) 17, 30, 365
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 4 cut(s) 118, 231, 250, 378
SseBI AGGCCT 1 cut(s) 301
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 3 cut(s) 10, 181, 301
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 86
TasI AATT 4 cut(s) 118, 231, 250, 378
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 2 cut(s) 41, 394
Tru1I TTAA 3 cut(s) 197, 248, 267
Tru9I TTAA 3 cut(s) 197, 248, 267
TscAI CASTG 2 cut(s) 225, 409
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 240, 243
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 299, 314
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 2 cut(s) 225, 409
VpaK11BI GGWCC 3 cut(s) 17, 30, 365
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 286
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.