Rroxscaffold_2G00097020

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
18329068 .. 18332216
3149 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00097020.1

Sequence Viewer

Length: 150 bp
ATGAAATTTTTTTTCTTTTGGGATTTTGTTGTTCGTTGGGGGGGAGAGAGAGAGAGAGATAGAACAGGGGAAGAGGGGGAAGGAGTCTATGCAAAGGAGTATCTAGATTGTTCTTTTGCCTCTATTCCTGGTTTTGTTGCTTGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.82

Weight (kDa)

4.65

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 5
AjnI CCWGG 1 cut(s) 127
ApoI RAATTY 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 127
FaiI YATR 1 cut(s) 90
FspBI CTAG 1 cut(s) 104
HinfI GANTC 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 92
LpnPI CCDG 3 cut(s) 51, 114, 141
MaeI CTAG 1 cut(s) 104
MboII GAAGA 1 cut(s) 83
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 2 cut(s) 67, 130
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 129
SgeI CNNG 4 cut(s) 78, 116, 140, 141
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 127
TasI AATT 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 103
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.