RLG00000010177

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018970
Physical Location & Seq
Forward (+)
63888257 .. 63890711
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010177

Sequence Viewer

Length: 396 bp
ATGCAGCAACACCCCTGCTTGCTCGTCTGTACCGACCTTGTTCAGGCCTGCAGGTGCCCCACTCCGGCGCTCTCCACCATCACGACCACCATCTTGACGTCTCCAGATCACCGTCCCGGACTAGACGGCATCAACGGACCTCCTCAGATCACTGGCGATCTCAGCGACAACCTCCGTAGAATGTCGAAACTCGAGGCTTTGACGCGATACTGTGGTATTTGTCATCGAAAGAAATTCCGAAGAAAGGAAAACAATAGAAGCTCTTGCGTTGTTGGGATCGGGGGAAGAGAAGAAGAGGTTTTTCATCAGAGGTTTTATGCAAAGGAGTATTTGGGTTGTTCTTTTGCCAGTGTTCCTGGTTTGGTTAGTTGGTGTTACTTGGTTGTGCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

8.8

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 42
AatII GACGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 54
AccII CGCG 1 cut(s) 205
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 43, 64, 244
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 4, 388
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BanI GGYRCC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 16, 375
BccI CCATC 2 cut(s) 86, 98
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 5, 389
BlsI GCNGC 2 cut(s) 6, 390
Bme1390I CCNGG 2 cut(s) 117, 357
Bme18I GGWCC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 117, 357
BmsI GCATC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 98
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 64, 244
Bse1I ACTGG 2 cut(s) 157, 348
BseBI CCWGG 1 cut(s) 357
BseLI CCNNNNNNNGG 3 cut(s) 43, 64, 244
BseMII CTCAG 2 cut(s) 158, 175
BseNI ACTGG 2 cut(s) 157, 348
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 16, 375
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 65, 117
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 43, 64, 244
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 106, 147, 157, 276
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 157, 174
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 54
BsrI ACTGG 2 cut(s) 157, 348
BssMI GATC 4 cut(s) 106, 147, 157, 276
BssNI GRCGYC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 113, 212
Bst6I CTCTTC 2 cut(s) 280, 288
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 20, 49
BstDEI CTNAG 2 cut(s) 144, 161
BstENI CCTNNNNNAGG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 109, 150, 160, 279
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 106, 147, 157, 276
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 115, 355
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 16, 375
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 150, 355
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 20, 49
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 30
CviJI RGCY 3 cut(s) 47, 197, 261
CviKI_1 RGCY 3 cut(s) 47, 197, 261
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 2 cut(s) 144, 161
DpnI GATC 4 cut(s) 108, 149, 159, 278
DpnII GATC 4 cut(s) 106, 147, 157, 276
Eam1104I CTCTTC 2 cut(s) 280, 288
EarI CTCTTC 2 cut(s) 280, 288
Eco147I AGGCCT 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 105
FaiI YATR 1 cut(s) 318
FaqI GGGAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 5, 389
Fsp4HI GCNGC 2 cut(s) 5, 389
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 5, 389
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 65, 117
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 2 cut(s) 65, 117
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 147, 239, 309
Hpy188III TCNNGA 3 cut(s) 82, 94, 104
HpyCH4III ACNGT 2 cut(s) 113, 212
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 4, 51, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 144, 161
HpySE526I ACGT 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 98
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 4 cut(s) 106, 147, 157, 276
Lsp1109I GCAGC 2 cut(s) 16, 375
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 108, 149, 159, 278
MboI GATC 4 cut(s) 106, 147, 157, 276
MboII GAAGA 4 cut(s) 252, 297, 302, 305
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 233
MnlI CCTC 6 cut(s) 150, 153, 182, 187, 289, 303
MspI CCGG 2 cut(s) 65, 117
MspR9I CCNGG 2 cut(s) 117, 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 117
NdeII GATC 4 cut(s) 106, 147, 157, 276
NlaIV GGNNCC 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 191
PaqCI CACCTGC 1 cut(s) 42
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 6, 390
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 191
PstI CTGCAG 1 cut(s) 53
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SatI GCNGC 2 cut(s) 5, 389
Sau3AI GATC 4 cut(s) 106, 147, 157, 276
Sau96I GGNCC 1 cut(s) 137
SbfI CCTGCAGG 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 117, 357
SdaI CCTGCAGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 59
SetI ASST 8 cut(s) 39, 56, 101, 142, 174, 263, 300, 314
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse8387I CCTGCAGG 1 cut(s) 53
Sse9I AATT 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 47
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 115, 355
TaaI ACNGT 2 cut(s) 113, 212
TaiI ACGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 185, 192, 226
TasI AATT 1 cut(s) 233
TscAI CASTG 2 cut(s) 157, 355
TseI GCWGC 2 cut(s) 4, 388
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 150, 164
TspRI CASTG 2 cut(s) 157, 355
VpaK11BI GGWCC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 191
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.