Rroxscaffold_2G00128270

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018970
Physical Location & Seq
Reverse (-)
63964392 .. 63966912
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128270.1

Sequence Viewer

Length: 225 bp
ATGGTGATGTTTAAAGATCTGACTGGAAACATTTCTGGCCTCAGGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTTGCATGTCAACTGGACCACACTTCACAATTGTTGATAAGCAGCCACAGCCAACAGTAGCTGCAGAAGAAACAATCGGAAGACACCTAGGAGGAACTGGTGTAAAAAAGCTGTTCGAATTTGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

74

Amino Acids

7.98

Weight (kDa)

6.48

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 7 - 62 2.2e-12 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 155, 205
AluI AGCT 2 cut(s) 155, 205
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 2 cut(s) 37, 44
ApeKI GCWGC 2 cut(s) 136, 155
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 31
AspA2I CCTAGG 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 16, 92
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 110
AvrII CCTAGG 1 cut(s) 181
AxyI CCTNAGG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 142, 148
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 16
BisI GCNGC 2 cut(s) 137, 156
BlnI CCTAGG 1 cut(s) 181
BlsI GCNGC 2 cut(s) 138, 157
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 47, 181
Bse1I ACTGG 3 cut(s) 28, 112, 196
Bse21I CCTNAGG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 47, 181
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 3 cut(s) 28, 112, 196
BseXI GCAGC 2 cut(s) 142, 148
BshFI GGCC 2 cut(s) 39, 46
BsnI GGCC 2 cut(s) 39, 46
Bsp119I TTCGAA 1 cut(s) 210
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 2 cut(s) 39, 46
BspCNI CTCAG 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 210
BsrI ACTGG 3 cut(s) 28, 112, 196
BssECI CCNNGG 2 cut(s) 47, 181
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 95, 151
BstBI TTCGAA 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 103, 223
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 142, 148
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 2 cut(s) 39, 46
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 110
CviAII CATG 5 cut(s) 56, 65, 71, 100, 220
CviJI RGCY 7 cut(s) 39, 46, 52, 139, 145, 155, 205
CviKI_1 RGCY 7 cut(s) 39, 46, 52, 139, 145, 155, 205
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 5 cut(s) 59, 68, 74, 103, 223
FaiI YATR 5 cut(s) 57, 66, 72, 101, 221
FatI CATG 5 cut(s) 55, 64, 70, 99, 219
Fnu4HI GCNGC 2 cut(s) 137, 156
Fsp4HI GCNGC 2 cut(s) 137, 156
FspBI CTAG 1 cut(s) 182
GluI GCNGC 2 cut(s) 137, 156
HaeIII GGCC 2 cut(s) 39, 46
Hin1II CATG 5 cut(s) 59, 68, 74, 103, 223
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HphI GGTGA 2 cut(s) 16, 92
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 21, 173
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 95, 151
HpyCH4V TGCA 2 cut(s) 99, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 5 cut(s) 59, 68, 74, 103, 223
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 9, 21, 28, 33, 60, 93, 177
Lsp1109I GCAGC 2 cut(s) 142, 148
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 173, 186
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 16
MluCI AATT 2 cut(s) 123, 212
MnlI CCTC 2 cut(s) 50, 179
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 1 cut(s) 16
NlaIII CATG 5 cut(s) 59, 68, 74, 103, 223
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 2 cut(s) 103, 223
NspV TTCGAA 1 cut(s) 210
PceI AGGCCT 1 cut(s) 46
PciI ACATGT 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 138, 157
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 110
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 137, 156
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 48
SetI ASST 3 cut(s) 157, 183, 207
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 2 cut(s) 123, 212
SseBI AGGCCT 1 cut(s) 46
SspMI CTAG 1 cut(s) 182
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 95, 151
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 123, 212
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 136, 155
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 44, 59
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 103, 223
XmaJI CCTAGG 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.