Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018970

Physical Location & Seq

Genomic Coordinates Reverse (-)

20581022 .. 20582758

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTGATGTTTAAAGATCTGACTGGAAACATTTCTGGCCTCAGGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACAGTTGCATGTCAACTGGACCACACTTCACAATTGTTGATAAGCAGGTTGTTTTCTGGACAAAAGTGTACCATCCGAACATTAATAGCAATGGTAGTATCTGCCTTGACATGCTTAAAGAGAAATGGAGCCCTGCCCCGAGTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

79

Amino Acids

8.71

Weight (kDa)

7.87

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	7 - 50	1.2e-11	Copper/zinc superoxide dismutase (SODC)
UQ_con	PF00179	46 - 76	2.4e-10	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0115651 RchiOBHm_Chr2g0126391 RchiOBHm_Chr4g0402041
rosa_laevigata	RLG00000010177
rosa_roxburghii	Rroxscaffold_160G00433680 Rroxscaffold_2G00097020 Rroxscaffold_2G00128270 Rroxscaffold_7G00208410
rosa_samantha	Rh2DG101300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	2 cut(s)	37, 44
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	16, 92
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	224
BccI	CCATC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	28, 112
Bse21I	CCTNAGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	28, 112
BshFI	GGCC	2 cut(s)	39, 46
BsiHKCI	CYCGRG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	39, 46
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	39, 46
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	28, 112
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	103, 205
BstSCI	CCNGG	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	39, 46
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	56, 65, 71, 100, 202
CviJI	RGCY	4 cut(s)	39, 46, 52, 222
CviKI_1	RGCY	4 cut(s)	39, 46, 52, 222
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraI	TTTAAA	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	5 cut(s)	59, 68, 74, 103, 205
FaiI	YATR	5 cut(s)	57, 66, 72, 101, 203
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	55, 64, 70, 99, 201
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	39, 46
Hin1II	CATG	5 cut(s)	59, 68, 74, 103, 205
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	2 cut(s)	16, 92
Hpy166II	GTNNAC	2 cut(s)	105, 160
Hpy188I	TCNGA	2 cut(s)	21, 168
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	105, 160
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	59, 68, 74, 103, 205
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	8 cut(s)	9, 21, 28, 33, 60, 93, 122, 133
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	3 cut(s)	12, 174, 207
MslI	CAYNNNNRTG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	5 cut(s)	59, 68, 74, 103, 205
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	80
NspI	RCATGY	2 cut(s)	103, 205
PceI	AGGCCT	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	12, 174, 207
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	1 cut(s)	141
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	12, 174, 207
Tru9I	TTAA	3 cut(s)	12, 174, 207
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	44, 59
VpaK11BI	GGWCC	1 cut(s)	110
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	2 cut(s)	103, 205
XmnI	GAANNNNTTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.