Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018980

Physical Location & Seq

Genomic Coordinates Reverse (-)

43513244 .. 43519274

Gene Structure 6031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGAAGGAACCTAATTTGACGAAGGAGCAAATAAAGGATCAACTTAAGGCATATCTTGGAGTGACGAAGATTATTTGGTTCCCCCGTGGATTGTATGTTACAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACGTTGCCAATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGATGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

80

Amino Acids

9.15

Weight (kDa)

7.97

Isoelectric Point (pI)

14.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	3 - 35	2.1e-06	Porphyromonas-type peptidyl-arginine deiminase
PAD_porph	PF04371	35 - 80	3.2e-14	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018980)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0128461 RchiOBHm_Chr4g0407261
rosa_samantha	Rh1DG060700 Rh2DG361100 Rh3AG070200 Rh3CG071000 Rh5AG465300 Rh5CG262500 Rh7AG285400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	173, 187
AflII	CTTAAG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	12, 83, 179
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 187
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	173, 187
BseMI	GCAATG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	191, 203
BslI	CCNNNNNNNGG	2 cut(s)	173, 187
BsmFI	GGGAC	2 cut(s)	191, 203
Bsp143I	GATC	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	12, 83, 179
BspPI	GGATC	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	40
BstAFI	CTTAAG	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstV1I	GCAGC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	3 cut(s)	122, 200, 221
CviKI_1	RGCY	3 cut(s)	122, 200, 221
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	178
FaeI	CATG	1 cut(s)	236
FaiI	YATR	5 cut(s)	55, 99, 129, 229, 234
FaqI	GGGAC	2 cut(s)	191, 203
FatI	CATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	28, 152
LpnPI	CCDG	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	64, 100
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	3 cut(s)	16, 133, 170
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	3 cut(s)	12, 83, 179
NmuCI	GTSAC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	12, 83, 179
PspPI	GGNCC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	216
SetI	ASST	3 cut(s)	16, 124, 144
SgeI	CNNG	7 cut(s)	71, 99, 101, 117, 123, 128, 218
SinI	GGWCC	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	16, 133, 170
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	16, 133, 170
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.