RchiOBHm_Chr4g0407261

agmatine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018980
Physical Location & Seq
Reverse (-)
29371599 .. 29372722
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37850

Sequence Viewer

Length: 225 bp
ATGAAGGAGCAAATAAAGGATCAACTTAAGGCATATCTTGGAGTGACGAAGATTATTTGGTTCCCCTGTGGATTGTATGTTGCAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACGTTGCCAATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGATGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAGTAAGCTGA

Protein Analysis

74

Amino Acids

8.34

Weight (kDa)

7.84

Isoelectric Point (pI)

15.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAD_porph PF04371 28 - 73 1.6e-14 Porphyromonas-type peptidyl-arginine deiminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 152, 166
AflII CTTAAG 1 cut(s) 26
AluBI AGCT 2 cut(s) 101, 222
AluI AGCT 2 cut(s) 101, 222
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 110
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 62, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 166
Bse3DI GCAATG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 152, 166
BseMI GCAATG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 110
BslFI GGGAC 2 cut(s) 170, 182
BslI CCNNNNNNNGG 2 cut(s) 152, 166
BsmFI GGGAC 2 cut(s) 170, 182
Bsp143I GATC 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 62, 158
BspPI GGATC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 1 cut(s) 19
BstAFI CTTAAG 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 85
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstV1I GCAGC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 1 cut(s) 212
CviJI RGCY 4 cut(s) 101, 179, 200, 222
CviKI_1 RGCY 4 cut(s) 101, 179, 200, 222
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 157
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 34, 78, 108, 208, 213
FaqI GGGAC 2 cut(s) 170, 182
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 83, 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 7, 131
LpnPI CCDG 2 cut(s) 69, 79
Lsp1109I GCAGC 1 cut(s) 110
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 61
MluCI AATT 2 cut(s) 112, 149
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 169
MseI TTAA 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 62, 158
NmuCI GTSAC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 62, 158
PspPI GGNCC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 195
SetI ASST 3 cut(s) 103, 123, 224
SgeI CNNG 6 cut(s) 50, 78, 96, 102, 107, 197
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 112, 149
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 112, 149
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 152
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.