Rh5AG465300

agmatine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018980
Physical Location & Seq
Reverse (-)
79756818 .. 79759511
2694 bp
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UTR
Exon/CDS
Intron
Rh5AG465300.1

Sequence Viewer

Length: 189 bp
ATGGTAGTGGGTAGGAACATAGATTTCATCACGGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACGTTGCCAATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGATGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAACTTTATGGGAGGGTCAATTATAG

Protein Analysis

62

Amino Acids

6.99

Weight (kDa)

5.0

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAD_porph PF04371 11 - 55 2.5e-14 Porphyromonas-type peptidyl-arginine deiminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 101
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 101, 115
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 115
Bse3DI GCAATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 101, 115
BseMI GCAATG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 1 cut(s) 59
BslFI GGGAC 2 cut(s) 119, 131
BslI CCNNNNNNNGG 2 cut(s) 101, 115
BsmFI GGGAC 2 cut(s) 119, 131
Bsp1286I GDGCHC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 89
BstHHI GCGC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 50, 128, 149
CviKI_1 RGCY 3 cut(s) 50, 128, 149
Eco47I GGWCC 1 cut(s) 106
FaeI CATG 1 cut(s) 164
FaiI YATR 6 cut(s) 20, 57, 157, 162, 172, 187
FaqI GGGAC 2 cut(s) 119, 131
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 3 cut(s) 61, 98, 182
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 2 cut(s) 118, 169
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 1 cut(s) 106
SatI GCNGC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 1 cut(s) 38
SetI ASST 2 cut(s) 52, 72
SgeI CNNG 6 cut(s) 43, 45, 51, 56, 146, 173
SinI GGWCC 1 cut(s) 106
Sse9I AATT 3 cut(s) 61, 98, 182
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 143
TasI AATT 3 cut(s) 61, 98, 182
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 16, 177
Van91I CCANNNNNTGG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.