Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0018980

Physical Location & Seq

Genomic Coordinates Reverse (-)

4966404 .. 4972337

Gene Structure 5934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCTTTAGTAATTGATAGAGTACAGACTGACAAACTGAAGATTTCATTAGGCGTTGATGATGATTGTTATCCAGACTGGAATCATGACCTCCTTGTGTCACGGAAGGATGATGCTAAACCGAGACTTGCAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACATTGCTAATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGATGATGAGGTAGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAGAGGTCTTTCCAATCAATAGCTTCTTGGCCAATCAAGACCAAACTCTACCTTTGCCAAAAGTACGAATGCAAAGTGCTCTCTCTCTTAAAAAGAAGGGAATCACACATAGGAGACGTATGGATTTTAGTAGATCCATATATGATGGGTTTCTAAAGGTTTTCCATAAAAGGCGTTTAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016787 GO:0016810 GO:0016813 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0047632 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

PAD_porph

Protein Analysis

149

Amino Acids

17.21

Weight (kDa)

9.52

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAD_porph	PF04371	41 - 94	1.2e-13	Porphyromonas-type peptidyl-arginine deiminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018980)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0128461 RchiOBHm_Chr4g0407261
rosa_samantha	Rh1DG060700 Rh2DG361100 Rh3AG070200 Rh3CG071000 Rh5AG465300 Rh5CG262500 Rh7AG285400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	24, 327
AfiI	CCNNNNNNNGG	3 cut(s)	200, 214, 265
AluBI	AGCT	2 cut(s)	149, 285
AluI	AGCT	2 cut(s)	149, 285
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	118, 370
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	118, 370
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 214, 265
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	168, 186
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	2 cut(s)	115, 223
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	200, 214, 265
BseMI	GCAATG	2 cut(s)	168, 186
BseNI	ACTGG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	200, 214, 265
BsmAI	GTCTC	2 cut(s)	118, 370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	168, 186
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	115, 223
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	2 cut(s)	118, 370
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	115, 223
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	23, 326
CviAII	CATG	2 cut(s)	86, 260
CviJI	RGCY	4 cut(s)	149, 248, 285, 293
CviKI_1	RGCY	4 cut(s)	149, 248, 285, 293
CviQI	GTAC	2 cut(s)	23, 326
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	2 cut(s)	89, 263
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	85, 259
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	122, 230
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	89, 263
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	82, 234, 363
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	3 cut(s)	74, 86, 299
HpyAV	CCTTC	2 cut(s)	100, 352
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	131, 146, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	89, 263
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	64, 87, 117
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	2 cut(s)	52, 275
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	4 cut(s)	12, 160, 197, 445
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	3 cut(s)	101, 217, 259
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	351, 440
Msp20I	TGGCCA	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	89, 263
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	99
PagI	TCATGA	1 cut(s)	85
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	82, 363
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	2 cut(s)	24, 327
RsaNI	GTAC	2 cut(s)	23, 326
SaqAI	TTAA	2 cut(s)	351, 440
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	8 cut(s)	93, 151, 228, 270, 287, 316, 382, 423
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	4 cut(s)	12, 160, 197, 445
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	242
TasI	AATT	4 cut(s)	12, 160, 197, 445
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	82, 363
Tru1I	TTAA	2 cut(s)	351, 440
Tru9I	TTAA	2 cut(s)	351, 440
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	36, 276
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.