Rh5CG262500

agmatine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018980
Physical Location & Seq
Forward (+)
28023872 .. 28027494
3623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG262500.1

Sequence Viewer

Length: 357 bp
ATGGTAAGAACTATACTTGGCTACTATCTAATGATTGGTTTACTTTCTTTCATTTGGGAATTAGGCACAAGACTTGCAGCTTCTTATGTGAATTTCTACGTTGCCAATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGATGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAAACCATGCTACTGTATTTAAGATTTCATGGATTGCAAAATGTTGCAACTTATACACAACAGTTGGGAAAGATACTGTTTCACAGATAAAAACTAGAGATGTGATTCGATCTGCAAAGCTGGTCGAAGGTCAAGATCGTCTAGTGTTGCCAAATGAGAAGTGA

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

8.93

Isoelectric Point (pI)

17.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAD_porph PF04371 22 - 65 3.2e-13 Porphyromonas-type peptidyl-arginine deiminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 131
AcsI RAATTY 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 131, 145
AluBI AGCT 2 cut(s) 80, 313
AluI AGCT 2 cut(s) 80, 313
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 91
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 89
BfaI CTAG 2 cut(s) 288, 335
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 145
Bse3DI GCAATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 131, 145
BseMI GCAATG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 89
BslFI GGGAC 2 cut(s) 149, 161
BslI CCNNNNNNNGG 2 cut(s) 131, 145
BsmFI GGGAC 2 cut(s) 149, 161
Bsp143I GATC 2 cut(s) 302, 328
BspLI GGNNCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 2 cut(s) 302, 328
Bst4CI ACNGT 3 cut(s) 208, 256, 271
BstAPI GCANNNNNTGC 1 cut(s) 119
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 305, 331
BstMBI GATC 2 cut(s) 302, 328
BstMWI GCNNNNNNNGC 2 cut(s) 110, 119
BstV1I GCAGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 3 cut(s) 191, 200, 222
CviJI RGCY 5 cut(s) 21, 80, 158, 179, 313
CviKI_1 RGCY 5 cut(s) 21, 80, 158, 179, 313
DpnI GATC 2 cut(s) 304, 330
DpnII GATC 2 cut(s) 302, 328
Eco47I GGWCC 1 cut(s) 136
FaeI CATG 3 cut(s) 194, 203, 225
FaiI YATR 7 cut(s) 14, 87, 187, 192, 201, 223, 247
FaqI GGGAC 2 cut(s) 149, 161
FatI CATG 3 cut(s) 190, 199, 221
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 2 cut(s) 288, 335
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 78
HhaI GCGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 194, 203, 225
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 2 cut(s) 165, 298
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 208, 256, 271
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 4 cut(s) 77, 230, 240, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 119
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 3 cut(s) 194, 203, 225
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 302, 328
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 1 cut(s) 299
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 288, 335
MaeII ACGT 1 cut(s) 99
MalI GATC 2 cut(s) 304, 330
MboI GATC 2 cut(s) 302, 328
MluCI AATT 3 cut(s) 59, 91, 128
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 1 cut(s) 148
MseI TTAA 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 110, 119
NdeII GATC 2 cut(s) 302, 328
NlaIII CATG 3 cut(s) 194, 203, 225
NlaIV GGNNCC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 298
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 302, 328
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 174
SetI ASST 4 cut(s) 82, 102, 315, 325
SinI GGWCC 1 cut(s) 136
Sse9I AATT 3 cut(s) 59, 91, 128
SspMI CTAG 2 cut(s) 288, 335
TaaI ACNGT 3 cut(s) 208, 256, 271
TaiI ACGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 173, 301, 318
TasI AATT 3 cut(s) 59, 91, 128
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 40, 207, 210
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 91
XspI CTAG 2 cut(s) 288, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.