RchiOBHm_Chr2g0130451

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
46466628 .. 46466909
282 bp
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UTR
Exon/CDS
Intron
PRQ50191

Sequence Viewer

Length: 234 bp
ATGGTTTCGTGGCTCGTGGATGGAGCGGAAGTGTTTCGCGTGAATAATTATTCAGGAAGCGTCGTTTTAGGGGGGGGGCAAGGGTTGAATTTTTATTCGTTGGGATTCTCTAGAAACTTCCTTCACAAAAGTTGTAGAGCCCGTCGATATGAGTTCGTGGATATGTGGAACATGGAAATCGGAGTTTGTACGAGGAAGTTATGGCCATTGGAAGAAGTTTCCATTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.84

Weight (kDa)

7.81

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 26
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 1 cut(s) 88
AoxI GGCC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 205
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 14
BccI CCATC 1 cut(s) 14
BfaI CTAG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
BseGI GGATG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 205
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 205
BspFNI CGCG 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 26
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 39
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 25
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 13, 140, 205
CviKI_1 RGCY 3 cut(s) 13, 140, 205
CviQI GTAC 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 175
FaiI YATR 5 cut(s) 150, 164, 173, 202, 232
FatI CATG 1 cut(s) 171
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 142
FspBI CTAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 205
HgaI GACGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 54, 111
Hpy99I CGWCG 2 cut(s) 65, 147
HpyAV CCTTC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 175
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 39
MaeI CTAG 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 26
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 205
MluCI AATT 2 cut(s) 46, 88
MluNI TGGCCA 1 cut(s) 205
MnlI CCTC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 205
Msp20I TGGCCA 1 cut(s) 205
MvnI CGCG 1 cut(s) 39
NlaIII CATG 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 105
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 142
Sse9I AATT 2 cut(s) 46, 88
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 111
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 46, 88
TfiI GAWTC 1 cut(s) 105
XapI RAATTY 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.