Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

12400722 .. 12404460

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGACATGAGGAACGCGGAAATTGAAGTTTGTATGAAGGAGTTATGGCCGTCGGAAAAAGTTTCCATTTTGGTATATATGAGATTTTTCGGAAAAAATATTAGAAAAATCGAGTTGCCATTTTTAGAAAGTTTTCTCTCTCTTCTCTCCCGAGCCCGAGTCTCCCCGCCATCTTCACTAGTTGATTTCTTCGCCGTCCGGCATCCATCGGACACGATTCTAAGTGGGCTTTGTTCGCCTCAACCTCTACTACAAGTCGCGGAAGCGATCGAGGTCGAGCGTGGTGGGCCCCGCAAGGTCGAGAAGAGGCTGCGACGGAGCCGCAATCGCCTTCATTGGAACCGGAGATTTCAGCCACCTTTGCTCGTGATTCTTGAGGGCTTTTGGAGCCCGAAAGACCTCCCCGAATTTCCAGAATTGACAAGACTCAAGGATTTATCATTGAGCTATAACATTATTGAAAGGCGGGACAGCCAATTTGATTGGTGGCAAAGCATCCTTAAATTGACAACTGCAGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

20.47

Weight (kDa)

9.46

Isoelectric Point (pI)

82.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	17, 260
AciI	CCGC	6 cut(s)	17, 167, 260, 292, 322, 466
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	26, 461
AhlI	ACTAGT	1 cut(s)	178
AluBI	AGCT	1 cut(s)	447
AluI	AGCT	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	166
Ama87I	CYCGRG	2 cut(s)	150, 156
AoxI	GGCC	2 cut(s)	47, 287
ApaI	GGGCCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	287, 288
AvaI	CYCGRG	2 cut(s)	150, 156
BaeGI	GKGCMC	1 cut(s)	291
BanII	GRGCYC	3 cut(s)	157, 291, 392
BauI	CACGAG	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	178, 214
BceAI	ACGGC	2 cut(s)	34, 179
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	2 cut(s)	311, 322
BlsI	GCNGC	2 cut(s)	312, 323
BmeT110I	CYCGRG	2 cut(s)	150, 156
BmgT120I	GGNCC	2 cut(s)	287, 288
BmiI	GGNNCC	5 cut(s)	289, 290, 320, 341, 389
BmsI	GCATC	2 cut(s)	211, 504
BpuEI	CTTGAG	2 cut(s)	395, 413
BsaWI	WCCGGW	1 cut(s)	342
BseGI	GGATG	2 cut(s)	202, 495
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	17, 260
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	49, 289
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	2 cut(s)	150, 156
BsiSI	CCGG	2 cut(s)	199, 343
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	49, 289
BsoBI	CYCGRG	2 cut(s)	150, 156
Bsp120I	GGGCCC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	157, 291, 392
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	6 cut(s)	17, 167, 260, 292, 322, 466
BspANI	GGCC	2 cut(s)	49, 289
BspFNI	CGCG	2 cut(s)	17, 260
BspLI	GGNNCC	5 cut(s)	289, 290, 320, 341, 389
BspMAI	CTGCAG	1 cut(s)	517
BssMI	GATC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst6I	CTCTTC	2 cut(s)	147, 299
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	202, 495
BstFNI	CGCG	2 cut(s)	17, 260
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	267
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 286, 327, 361, 387
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	2 cut(s)	17, 260
BstV1I	GCAGC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	49, 289
BtsCI	GGATG	2 cut(s)	202, 495
Cfr13I	GGNCC	2 cut(s)	287, 288
CviAII	CATG	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	147, 299
EarI	CTCTTC	2 cut(s)	147, 299
Eco24I	GRGCYC	3 cut(s)	157, 291, 392
Eco88I	CYCGRG	2 cut(s)	150, 156
EcoO109I	RGGNCCY	1 cut(s)	288
EcoT38I	GRGCYC	3 cut(s)	157, 291, 392
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 35, 46, 76, 78, 80, 450
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	6
FauI	CCCGC	3 cut(s)	174, 299, 459
Fnu4HI	GCNGC	2 cut(s)	311, 322
FokI	GGATG	2 cut(s)	189, 482
FriOI	GRGCYC	3 cut(s)	157, 291, 392
Fsp4HI	GCNGC	2 cut(s)	311, 322
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	2 cut(s)	311, 322
HaeIII	GGCC	2 cut(s)	49, 289
HapII	CCGG	2 cut(s)	199, 343
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	4 cut(s)	159, 217, 370, 426
HpaII	CCGG	2 cut(s)	199, 343
Hpy188I	TCNGA	3 cut(s)	55, 92, 211
Hpy188III	TCNNGA	5 cut(s)	150, 301, 367, 374, 413
Hpy99I	CGWCG	2 cut(s)	55, 318
HpyAV	CCTTC	2 cut(s)	31, 341
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 286, 327, 361, 387
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	318, 387
LpnPI	CCDG	3 cut(s)	212, 356, 426
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	2 cut(s)	211, 504
MaeI	CTAG	1 cut(s)	179
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	134, 165, 181, 316
MhlI	GDGCHC	3 cut(s)	157, 291, 392
MluCI	AATT	5 cut(s)	21, 407, 416, 476, 503
MlyI	GAGTC	2 cut(s)	168, 420
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	3, 249, 255, 265, 300, 370, 410
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	501
MspI	CCGG	2 cut(s)	199, 343
MvnI	CGCG	2 cut(s)	17, 260
MwoI	GCNNNNNNNGC	5 cut(s)	235, 286, 327, 361, 387
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	5 cut(s)	289, 290, 320, 341, 389
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	217, 370
PkrI	GCNGC	2 cut(s)	312, 323
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	2 cut(s)	167, 420
PpsI	GAGTC	2 cut(s)	167, 420
PspN4I	GGNNCC	5 cut(s)	289, 290, 320, 341, 389
PspOMI	GGGCCC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	287, 288
PstI	CTGCAG	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	311, 322
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	287, 288
SchI	GAGTC	2 cut(s)	168, 420
SduI	GDGCHC	3 cut(s)	157, 291, 392
SetI	ASST	6 cut(s)	247, 276, 300, 361, 402, 449
SfaNI	GCATC	2 cut(s)	211, 504
SfcI	CTRYAG	1 cut(s)	513
SmlI	CTYRAG	2 cut(s)	374, 428
SmoI	CTYRAG	2 cut(s)	374, 428
SpeI	ACTAGT	1 cut(s)	178
Sse9I	AATT	5 cut(s)	21, 407, 416, 476, 503
SsiI	CCGC	6 cut(s)	17, 167, 260, 292, 322, 466
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	179
TaqI	TCGA	4 cut(s)	111, 270, 276, 300
TasI	AATT	5 cut(s)	21, 407, 416, 476, 503
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	217, 370
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	50, 323
TspGWI	ACGGA	1 cut(s)	331
XapI	RAATTY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.