Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

60461045 .. 60461377

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG381200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGACCAAGCAGGACTTCTTCCCGGAACCGACTTTCCACAACTTGAGTTCCTCCAAAGACTCCCTCTCCCACACCCCATCTCACCTCAAGGACCGCCTCCTCAACTGCTTCTCCGACTCCTTCGAGTCCTCCACCTCTCCAAGCAAAGCAGGCACCACATGCACCGCTGCCTCACCTGGTGGGACCTCATCTGGCTTGGCTTTGGCTCCGTCTTCGGCTCTGGAATTTTCGTCATCTCCGGCGAGGCCACTCTTCTAGCTGGACCCGCCATTGTCTTGTCCTACGCCATCTCTGACCTCTCGGCTTTGCTCTATGTCCTCTGCTACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

6.95

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	3 cut(s)	95, 166, 267
AcsI	RAATTY	1 cut(s)	225
AdeI	CACNNNGTG	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	225
AspS9I	GGNCC	4 cut(s)	4, 92, 184, 263
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	75, 166
AvaII	GGWCC	4 cut(s)	4, 92, 184, 263
BanI	GGYRCC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	86, 296
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	24, 178
Bme18I	GGWCC	4 cut(s)	4, 92, 184, 263
BmgT120I	GGNCC	4 cut(s)	4, 92, 184, 263
BmiI	GGNNCC	5 cut(s)	28, 155, 185, 208, 265
BmrFI	CCNGG	2 cut(s)	24, 178
BpiI	GAAGAC	1 cut(s)	205
BpuEI	CTTGAG	2 cut(s)	65, 72
BpuMI	CCSGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 96, 126
BseBI	CCWGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	24, 240
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	248
BspACI	CCGC	3 cut(s)	95, 166, 267
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	5 cut(s)	28, 155, 185, 208, 265
BspT107I	GGYRCC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 266
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	22, 176
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	4 cut(s)	4, 92, 184, 263
CsiI	ACCWGGT	1 cut(s)	176
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	7 cut(s)	196, 201, 207, 219, 248, 260, 305
CviKI_1	RGCY	7 cut(s)	196, 201, 207, 219, 248, 260, 305
DraIII	CACNNNGTG	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco47I	GGWCC	4 cut(s)	4, 92, 184, 263
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	1 cut(s)	163
FaiI	YATR	3 cut(s)	161, 315, 331
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	24, 240
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	3 cut(s)	60, 117, 126
HpaII	CCGG	2 cut(s)	24, 240
HphI	GGTGA	2 cut(s)	75, 166
Hpy188I	TCNGA	2 cut(s)	116, 295
Hpy188III	TCNNGA	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 266
Hsp92II	CATG	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	37, 136, 163, 178, 190, 207, 246, 253
Lsp1109I	GCAGC	1 cut(s)	155
MabI	ACCWGGT	1 cut(s)	176
MaeI	CTAG	1 cut(s)	257
MboII	GAAGA	3 cut(s)	11, 205, 245
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	3 cut(s)	54, 111, 135
MmeI	TCCRAC	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	24, 240
MspR9I	CCNGG	2 cut(s)	24, 178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 266
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	5 cut(s)	28, 155, 185, 208, 265
NmeAIII	GCCGAG	1 cut(s)	281
NspI	RCATGY	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	3 cut(s)	54, 111, 134
PpsI	GAGTC	3 cut(s)	54, 111, 134
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	5 cut(s)	28, 155, 185, 208, 265
PspPI	GGNCC	4 cut(s)	4, 92, 184, 263
PspPPI	RGGWCCY	1 cut(s)	184
SatI	GCNGC	1 cut(s)	169
Sau96I	GGNCC	4 cut(s)	4, 92, 184, 263
SchI	GAGTC	3 cut(s)	54, 111, 135
ScrFI	CCNGG	2 cut(s)	24, 178
SetI	ASST	6 cut(s)	88, 138, 179, 189, 262, 300
SexAI	ACCWGGT	1 cut(s)	176
SinI	GGWCC	4 cut(s)	4, 92, 184, 263
SmlI	CTYRAG	2 cut(s)	44, 87
SmoI	CTYRAG	2 cut(s)	44, 87
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	3 cut(s)	95, 166, 267
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	22, 176
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	225
TseI	GCWGC	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	199
VpaK11BI	GGWCC	4 cut(s)	4, 92, 184, 263
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.