Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000317.1

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

157577 .. 159016

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000317.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggattcccaaccgcaactggagcagcaagacccaaaacccagaagctactggaaaagatggaccaagcaggacttcttcccgaaacccactttccagaacttgagttcctccaaagacgccctctcccacaccccatcttacctcaaggactgcctcctcaaccgcttctccgactccttcaagctcctccacctccccaagcaaagcgagcaccacatgcatcgctgcctcacctggcgggaccacatctggctcggctttggctccatcgtcggctccggaattttcttcatcgccggagaggccactcttctagccgaacccgccattgtcttgtcctacaccatctccagcctctcggccctgctctctgtcctctgctacacagaatttgtcgtcgaagttactgttactggaggatctttctcatatcttctgatagaattgggagacttctttgcattcattgctgctgggaacattctcctccaggccatggtgggcgcggctgggttgcgcccgtcatggacttcttacttggttagcatgatcaacaccgacaacatagactttttgaggtttcaggtaaactctctgcctgatgggttcaatctgttggaccctattgctattgctgtgcttctggttgctaatggtatagcaatgagtgggacggctcggacttcgatgcaaaattggaaaataattagactcatagagcaaattctttgtcataccccggaaaattgtatttatttttcgaggattttccggaatttaaattggggttattggacggtttcgtggctcgtggatggagcggaagtgtttcggacgaatttttattcggaaaatatgactttaggggtggcgctaaagttgacttttgatacgttgagattcttcaaaaactttcttcacgaaagttatagagcgcgtcgatacgagttcgtggacaaatggaatgtgtcattcggagctcatcagatcgtctcctccgtctggtcgtccctctggtgtcctctagctgcgattctcctccatggaggcgctgcaagtctgcaaagtttggtgtcctctagctgcgattctcctccatggcggcactgcaagtctacaaagtttggtgttttcagacccgaccggaattccaagctcctgcgacggcacggcttcaagcttccatctttggtttcgtgggagactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

404

Amino Acids

45.94

Weight (kDa)

8.84

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	1118
AccII	CGCG	2 cut(s)	509, 940
AccIII	TCCGGA	2 cut(s)	281, 774
AciI	CCGC	7 cut(s)	14, 166, 241, 327, 509, 824, 1105
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	6 cut(s)	285, 392, 726, 778, 841, 1150
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	499, 1005
AgsI	TTSAA	4 cut(s)	184, 613, 910, 1180
AjnI	CCWGG	2 cut(s)	236, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	48, 187, 983, 1031, 1086, 1159, 1183
AluI	AGCT	7 cut(s)	48, 187, 983, 1031, 1086, 1159, 1183
Alw21I	GWGCWC	2 cut(s)	216, 985
Alw26I	GTCTC	3 cut(s)	447, 1000, 1199
AlwI	GGATC	1 cut(s)	430
Aor13HI	TCCGGA	2 cut(s)	281, 774
AoxI	GGCC	3 cut(s)	306, 363, 495
ApeKI	GCWGC	6 cut(s)	25, 228, 473, 1031, 1055, 1086
ApoI	RAATTY	6 cut(s)	285, 392, 726, 778, 841, 1150
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	5 cut(s)	509, 522, 877, 940, 1055
AspS9I	GGNCC	4 cut(s)	63, 244, 364, 622
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	3 cut(s)	63, 244, 622
BanII	GRGCYC	1 cut(s)	985
BauI	CACGAG	1 cut(s)	812
Bbv12I	GWGCWC	2 cut(s)	216, 985
BbvI	GCAGC	6 cut(s)	37, 215, 460, 1018, 1042, 1073
BccI	CCATC	7 cut(s)	54, 145, 278, 356, 599, 812, 1195
BceAI	ACGGC	3 cut(s)	693, 1184, 1189
BciT130I	CCWGG	2 cut(s)	238, 494
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	3 cut(s)	447, 1000, 1199
BfaI	CTAG	3 cut(s)	317, 1028, 1083
BfoI	RGCGCY	2 cut(s)	878, 1056
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	8 cut(s)	26, 229, 474, 510, 1032, 1056, 1087, 1106
BlsI	GCNGC	8 cut(s)	27, 230, 475, 511, 1033, 1057, 1088, 1107
Bme1390I	CCNGG	3 cut(s)	238, 494, 743
Bme18I	GGWCC	3 cut(s)	63, 244, 622
BmgT120I	GGNCC	4 cut(s)	63, 244, 364, 622
BmiI	GGNNCC	4 cut(s)	245, 268, 280, 624
BmrFI	CCNGG	3 cut(s)	238, 494, 743
BmsI	GCATC	2 cut(s)	232, 681
BpmI	CTGGAG	4 cut(s)	41, 337, 438, 476
BpuEI	CTTGAG	2 cut(s)	124, 131
BpuMI	CCSGG	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	498, 741, 1045, 1100
BsaWI	WCCGGW	3 cut(s)	281, 774, 1146
BsaXI	ACNNNNNCTCC	8 cut(s)	110, 140, 155, 185, 335, 365, 813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 1005
Bse1I	ACTGG	3 cut(s)	24, 56, 421
Bse3DI	GCAATG	2 cut(s)	468, 672
BseAI	TCCGGA	2 cut(s)	281, 774
BseBI	CCWGG	2 cut(s)	238, 494
BseDI	CCNNGG	4 cut(s)	498, 741, 1045, 1100
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	2 cut(s)	499, 1005
BseMI	GCAATG	2 cut(s)	468, 672
BseNI	ACTGG	3 cut(s)	24, 56, 421
BseRI	GAGGAG	6 cut(s)	149, 179, 479, 988, 1031, 1086
BseXI	GCAGC	6 cut(s)	37, 215, 460, 1018, 1042, 1073
BseYI	CCCAGC	2 cut(s)	476, 512
Bsh1236I	CGCG	2 cut(s)	509, 940
Bsh1285I	CGRYCG	1 cut(s)	1147
BshFI	GGCC	3 cut(s)	308, 365, 497
BsiEI	CGRYCG	1 cut(s)	1147
BsiHKAI	GWGCWC	2 cut(s)	216, 985
BsiSI	CCGG	5 cut(s)	282, 300, 743, 775, 1147
BslFI	GGGAC	3 cut(s)	257, 688, 997
BslI	CCNNNNNNNGG	2 cut(s)	499, 1005
BsmAI	GTCTC	3 cut(s)	447, 1000, 1199
BsmBI	CGTCTC	1 cut(s)	1000
BsmFI	GGGAC	3 cut(s)	257, 688, 997
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	308, 365, 497
Bsp1286I	GDGCHC	2 cut(s)	216, 985
Bsp13I	TCCGGA	2 cut(s)	281, 774
Bsp143I	GATC	3 cut(s)	422, 552, 990
Bsp19I	CCATGG	3 cut(s)	498, 1045, 1100
BspACI	CCGC	7 cut(s)	14, 166, 241, 327, 509, 824, 1105
BspANI	GGCC	3 cut(s)	308, 365, 497
BspEI	TCCGGA	2 cut(s)	281, 774
BspFNI	CGCG	2 cut(s)	509, 940
BspLI	GGNNCC	4 cut(s)	245, 268, 280, 624
BspPI	GGATC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	468, 672
BsrI	ACTGG	3 cut(s)	24, 56, 421
BssECI	CCNNGG	4 cut(s)	498, 741, 1045, 1100
BssMI	GATC	3 cut(s)	422, 552, 990
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	812
BssT1I	CCWWGG	3 cut(s)	498, 1045, 1100
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	2 cut(s)	238, 494
Bst4CI	ACNGT	2 cut(s)	412, 802
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	220, 470
BstC8I	GCNNGC	1 cut(s)	212
BstDSI	CCRYGG	3 cut(s)	498, 1045, 1100
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	2 cut(s)	509, 940
BstH2I	RGCGCY	2 cut(s)	878, 1056
BstHHI	GCGC	5 cut(s)	509, 522, 877, 940, 1055
BstKTI	GATC	3 cut(s)	425, 555, 993
BstMAI	GTCTC	3 cut(s)	447, 1000, 1199
BstMBI	GATC	3 cut(s)	422, 552, 990
BstMCI	CGRYCG	1 cut(s)	1147
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
BstNI	CCWGG	2 cut(s)	238, 494
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	236, 492, 741
BstUI	CGCG	2 cut(s)	509, 940
BstV1I	GCAGC	6 cut(s)	37, 215, 460, 1018, 1042, 1073
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	308, 365, 497
BtgI	CCRYGG	3 cut(s)	498, 1045, 1100
BtgZI	GCGATG	2 cut(s)	209, 280
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	1108
BtsIMutI	CAGTG	1 cut(s)	1108
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	5 cut(s)	509, 522, 877, 940, 1055
Cfr13I	GGNCC	4 cut(s)	63, 244, 364, 622
CseI	GACGC	2 cut(s)	128, 929
CviAII	CATG	6 cut(s)	220, 499, 528, 550, 1046, 1101
DpnI	GATC	3 cut(s)	424, 554, 992
DpnII	GATC	3 cut(s)	422, 552, 990
DraI	TTTAAA	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	983
Eco130I	CCWWGG	3 cut(s)	498, 1045, 1100
Eco24I	GRGCYC	1 cut(s)	985
Eco47I	GGWCC	3 cut(s)	63, 244, 622
Eco53kI	GAGCTC	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	983
EcoRI	GAATTC	1 cut(s)	1150
EcoRII	CCWGG	2 cut(s)	236, 492
EcoT14I	CCWWGG	3 cut(s)	498, 1045, 1100
EcoT22I	ATGCAT	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	985
ErhI	CCWWGG	3 cut(s)	498, 1045, 1100
Esp3I	CGTCTC	1 cut(s)	1000
FaeI	CATG	6 cut(s)	223, 502, 531, 553, 1049, 1104
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	3 cut(s)	257, 688, 997
FatI	CATG	6 cut(s)	219, 498, 527, 549, 1045, 1100
FauI	CCCGC	2 cut(s)	234, 334
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	1118
Fnu4HI	GCNGC	8 cut(s)	26, 229, 474, 510, 1032, 1056, 1087, 1106
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	8 cut(s)	26, 229, 474, 510, 1032, 1056, 1087, 1106
FspBI	CTAG	3 cut(s)	317, 1028, 1083
GlaI	GCGC	5 cut(s)	508, 521, 876, 939, 1054
GluI	GCNGC	8 cut(s)	26, 229, 474, 510, 1032, 1056, 1087, 1106
GsaI	CCCAGC	2 cut(s)	480, 516
GsuI	CTGGAG	4 cut(s)	41, 337, 438, 476
HaeII	RGCGCY	2 cut(s)	878, 1056
HaeIII	GGCC	3 cut(s)	308, 365, 497
HapII	CCGG	5 cut(s)	282, 300, 743, 775, 1147
HgaI	GACGC	2 cut(s)	128, 929
HhaI	GCGC	5 cut(s)	509, 522, 877, 940, 1055
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	6 cut(s)	223, 502, 531, 553, 1049, 1104
Hin6I	GCGC	5 cut(s)	507, 520, 875, 938, 1053
HinP1I	GCGC	5 cut(s)	507, 520, 875, 938, 1053
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	1181
HinfI	GANTC	7 cut(s)	5, 176, 714, 903, 1036, 1091, 1207
HpaII	CCGG	5 cut(s)	282, 300, 743, 775, 1147
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	4 cut(s)	592, 885, 958, 1119
Hpy188I	TCNGA	8 cut(s)	175, 441, 684, 837, 853, 980, 990, 1139
Hpy188III	TCNNGA	5 cut(s)	82, 97, 282, 775, 923
Hpy8I	GTNNAC	4 cut(s)	592, 885, 958, 1119
Hpy99I	CGWCG	4 cut(s)	278, 404, 945, 1170
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	412, 802
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	6 cut(s)	223, 464, 694, 1058, 1066, 1113
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
HpySE526I	ACGT	1 cut(s)	896
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	223, 502, 531, 553, 1049, 1104
HspAI	GCGC	5 cut(s)	507, 520, 875, 938, 1053
Kpn2I	TCCGGA	2 cut(s)	281, 774
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	422, 552, 990
LmnI	GCTCC	7 cut(s)	22, 192, 272, 284, 821, 980, 1164
Lsp1109I	GCAGC	6 cut(s)	37, 215, 460, 1018, 1042, 1073
LweI	GCATC	2 cut(s)	232, 681
MaeI	CTAG	3 cut(s)	317, 1028, 1083
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	2 cut(s)	406, 412
MalI	GATC	3 cut(s)	424, 554, 992
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	3 cut(s)	422, 552, 990
MboII	GAAGA	6 cut(s)	70, 283, 305, 428, 898, 911
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	216, 985
MlyI	GAGTC	3 cut(s)	170, 708, 1201
MmeI	TCCRAC	2 cut(s)	198, 600
Mph1103I	ATGCAT	1 cut(s)	225
MroI	TCCGGA	2 cut(s)	281, 774
MroXI	GAANNNNTTC	1 cut(s)	831
MseI	TTAA	1 cut(s)	782
MspI	CCGG	5 cut(s)	282, 300, 743, 775, 1147
MspR9I	CCNGG	3 cut(s)	238, 494, 743
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	2 cut(s)	238, 494
MvnI	CGCG	2 cut(s)	509, 940
MwoI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	3 cut(s)	498, 1045, 1100
NdeII	GATC	3 cut(s)	422, 552, 990
NlaIII	CATG	6 cut(s)	223, 502, 531, 553, 1049, 1104
NlaIV	GGNNCC	4 cut(s)	245, 268, 280, 624
NmeAIII	GCCGAG	2 cut(s)	237, 341
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	4 cut(s)	5, 903, 1036, 1091
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	8 cut(s)	27, 230, 475, 511, 1033, 1057, 1088, 1107
PleI	GAGTC	3 cut(s)	170, 708, 1201
PpsI	GAGTC	3 cut(s)	170, 708, 1201
Psp124BI	GAGCTC	1 cut(s)	985
Psp6I	CCWGG	2 cut(s)	236, 492
PspFI	CCCAGC	2 cut(s)	476, 512
PspGI	CCWGG	2 cut(s)	236, 492
PspN4I	GGNNCC	4 cut(s)	245, 268, 280, 624
PspPI	GGNCC	4 cut(s)	63, 244, 364, 622
PsuI	RGATCY	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	985
SaqAI	TTAA	1 cut(s)	782
SatI	GCNGC	8 cut(s)	26, 229, 474, 510, 1032, 1056, 1087, 1106
Sau3AI	GATC	3 cut(s)	422, 552, 990
Sau96I	GGNCC	4 cut(s)	63, 244, 364, 622
SchI	GAGTC	3 cut(s)	170, 708, 1201
ScrFI	CCNGG	3 cut(s)	238, 494, 743
SduI	GDGCHC	2 cut(s)	216, 985
SfaNI	GCATC	2 cut(s)	232, 681
SinI	GGWCC	3 cut(s)	63, 244, 622
SmiI	ATTTAAAT	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	103, 146
SmoI	CTYRAG	2 cut(s)	103, 146
SsiI	CCGC	7 cut(s)	14, 166, 241, 327, 509, 824, 1105
SspMI	CTAG	3 cut(s)	317, 1028, 1083
SstI	GAGCTC	1 cut(s)	985
StyD4I	CCNGG	3 cut(s)	236, 492, 741
StyI	CCWWGG	3 cut(s)	498, 1045, 1100
SwaI	ATTTAAAT	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	412, 802
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	4 cut(s)	402, 689, 764, 943
TauI	GCSGC	2 cut(s)	512, 1108
TfiI	GAWTC	4 cut(s)	5, 903, 1036, 1091
Tru1I	TTAA	1 cut(s)	782
Tru9I	TTAA	1 cut(s)	782
TscAI	CASTG	1 cut(s)	1115
TseI	GCWGC	6 cut(s)	25, 228, 473, 1031, 1055, 1086
TspDTI	ATGAA	2 cut(s)	283, 457
TspGWI	ACGGA	1 cut(s)	991
TspRI	CASTG	1 cut(s)	1115
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	3 cut(s)	63, 244, 622
XapI	RAATTY	6 cut(s)	285, 392, 726, 778, 841, 1150
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	1118
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	3 cut(s)	317, 1028, 1083
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.