Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Forward (+)

54973358 .. 54981139

Gene Structure 7782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG410900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATTCCCAACCGCAATCGGAGCAGCAAGACCCAAAACCCAGAAGCTATTGGAAAAGATGGACCAAGCAGGACTTCTTCCCGGAACCCACTTTCCACAACTTGAGTTCCTCCAAAGACGCCCTCTCCCACACCCCATCTCGCCTCAAGGACTGCCTCCTCAATCGCTTCTCCGACTCCTTCGAGCTCCTCCACCTCCCCAAGCAAAGCGAGCACCACATGCACTGCTGCCTCGCCTGGCGAGACCTCATCTGGCTCGGCTTCGGCTCCGGAATTTTCGTCATTGCCGGCGAGGCCACTCTTCTAGCCGGACCCACCATTGTCTTGTCCTACGCCATCTCCAGCCTCTCGGCTCTACTCTCTGTCCTCTGCTACACAGAATTCGCCGTCGAAGTTACTGTTGCTGGAGGATCTTTCTCATATCTTCGGATAGAATTGGGAGACTTCTTTGCGTTCATTGCTGCTGGGAACATTCTCCTCGAGGCCATGGTGGGCGCGGTTGGGTTGGGCCGGTCGTGGACTTCTTACTTAGCCAACATGATCAACACTGACTTTCTGAGTTTTCAGGTTTGGGCTTCAAAGTGGAACAAAAGAGCTTTTATTAGTTGTAAGAAAGCTAAACTAGATCGTGAGAATGTATGCACGGCTGTATTGATTCAAGAAATCATCTGTGCCGATTATGCCTTTGTTATTCACACAAAGAATCCCTTGTCAGGGAATACTGCAGAAATTTACACAGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

248

Amino Acids

27.79

Weight (kDa)

6.16

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	88 - 185	3.7e-06	Amino acid permease
PPDK_N	PF01326	189 - 245	1.3e-06	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	479
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	14, 497
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	3 cut(s)	273, 380, 729
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	713, 714
AgsI	TTSAA	2 cut(s)	579, 659
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	4 cut(s)	48, 187, 596, 617
AluI	AGCT	4 cut(s)	48, 187, 596, 617
Alw21I	GWGCWC	2 cut(s)	189, 216
Alw26I	GTCTC	2 cut(s)	237, 435
AlwI	GGATC	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	3 cut(s)	294, 483, 508
ApeKI	GCWGC	3 cut(s)	25, 228, 461
ApoI	RAATTY	3 cut(s)	273, 380, 729
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	3 cut(s)	63, 311, 508
AsuC2I	CCSGG	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	63, 311
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	189, 216
BbvI	GCAGC	3 cut(s)	37, 215, 448
BccI	CCATC	3 cut(s)	54, 145, 344
BceAI	ACGGC	2 cut(s)	371, 660
BciT130I	CCWGG	1 cut(s)	238
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	237, 435
BfaI	CTAG	2 cut(s)	305, 623
BfmI	CTRYAG	1 cut(s)	723
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	26, 229, 462
BlsI	GCNGC	3 cut(s)	27, 230, 463
Bme1390I	CCNGG	2 cut(s)	83, 238
Bme18I	GGWCC	2 cut(s)	63, 311
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	63, 311, 508
BmiI	GGNNCC	3 cut(s)	87, 268, 313
BmrFI	CCNGG	2 cut(s)	83, 238
BpmI	CTGGAG	2 cut(s)	325, 426
BpuEI	CTTGAG	2 cut(s)	124, 131
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 714
Bse118I	RCCGGY	2 cut(s)	287, 510
Bse3DI	GCAATG	2 cut(s)	282, 456
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	713, 714
BseMI	GCAATG	2 cut(s)	282, 456
BseMII	CTCAG	1 cut(s)	548
BseRI	GAGGAG	3 cut(s)	149, 179, 467
BseXI	GCAGC	3 cut(s)	37, 215, 448
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	3 cut(s)	296, 485, 510
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	189, 216
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	5 cut(s)	83, 270, 288, 309, 511
BslI	CCNNNNNNNGG	2 cut(s)	713, 714
BsmAI	GTCTC	2 cut(s)	237, 435
BsnI	GGCC	3 cut(s)	296, 485, 510
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	189, 216
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	410, 540, 625
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	14, 497
BspANI	GGCC	3 cut(s)	296, 485, 510
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	3 cut(s)	87, 268, 313
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	237
BsrDI	GCAATG	2 cut(s)	282, 456
BsrFI	RCCGGY	2 cut(s)	287, 510
BssAI	RCCGGY	2 cut(s)	287, 510
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	3 cut(s)	410, 540, 625
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	212, 289
BstDEI	CTNAG	2 cut(s)	529, 557
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	3 cut(s)	413, 543, 628
BstMAI	GTCTC	2 cut(s)	237, 435
BstMBI	GATC	3 cut(s)	410, 540, 625
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 293, 458, 680
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	81, 236
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	37, 215, 448
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	296, 485, 510
BtgI	CCRYGG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 546
Cac8I	GCNNGC	2 cut(s)	212, 289
CfoI	GCGC	1 cut(s)	497
Cfr10I	RCCGGY	2 cut(s)	287, 510
Cfr13I	GGNCC	3 cut(s)	63, 311, 508
CseI	GACGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	220, 487, 538
DdeI	CTNAG	2 cut(s)	529, 557
DpnI	GATC	3 cut(s)	412, 542, 627
DpnII	GATC	3 cut(s)	410, 540, 625
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	63, 311
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	3 cut(s)	223, 490, 541
FaiI	YATR	7 cut(s)	221, 421, 488, 539, 640, 681, 745
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 692, 724
FatI	CATG	3 cut(s)	219, 486, 537
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	26, 229, 462
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	26, 229, 462
FspBI	CTAG	2 cut(s)	305, 623
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	3 cut(s)	26, 229, 462
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	325, 426
HaeIII	GGCC	3 cut(s)	296, 485, 510
HapII	CCGG	5 cut(s)	83, 270, 288, 309, 511
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	223, 490, 541
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HinfI	GANTC	4 cut(s)	5, 176, 655, 703
HpaII	CCGG	5 cut(s)	83, 270, 288, 309, 511
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	4 cut(s)	22, 175, 429, 558
Hpy188III	TCNNGA	3 cut(s)	270, 629, 659
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	3 cut(s)	223, 642, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 293, 458, 680
HpyF3I	CTNAG	2 cut(s)	529, 557
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	223, 490, 541
HspAI	GCGC	1 cut(s)	495
Kpn2I	TCCGGA	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	410, 540, 625
LmnI	GCTCC	3 cut(s)	22, 192, 272
Lsp1109I	GCAGC	3 cut(s)	37, 215, 448
MaeI	CTAG	2 cut(s)	305, 623
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	3 cut(s)	412, 542, 627
MboI	GATC	3 cut(s)	410, 540, 625
MboII	GAAGA	3 cut(s)	70, 293, 416
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	189, 216
MluCI	AATT	4 cut(s)	273, 380, 434, 729
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	287
MspI	CCGG	5 cut(s)	83, 270, 288, 309, 511
MspR9I	CCNGG	2 cut(s)	83, 238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 293, 458, 680
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	3 cut(s)	410, 540, 625
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	3 cut(s)	223, 490, 541
NlaIV	GGNNCC	3 cut(s)	87, 268, 313
NmeAIII	GCCGAG	2 cut(s)	237, 329
NspI	RCATGY	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	5, 655, 703
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	27, 230, 463
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	87, 268, 313
PspPI	GGNCC	3 cut(s)	63, 311, 508
PspXI	VCTCGAGB	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	3 cut(s)	26, 229, 462
Sau3AI	GATC	3 cut(s)	410, 540, 625
Sau96I	GGNCC	3 cut(s)	63, 311, 508
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	83, 238
SduI	GDGCHC	2 cut(s)	189, 216
SetI	ASST	8 cut(s)	50, 189, 198, 249, 570, 598, 619, 744
SfcI	CTRYAG	1 cut(s)	723
Sfr274I	CTCGAG	1 cut(s)	479
SinI	GGWCC	2 cut(s)	63, 311
SlaI	CTCGAG	1 cut(s)	479
SmlI	CTYRAG	3 cut(s)	103, 146, 479
SmoI	CTYRAG	3 cut(s)	103, 146, 479
Sse9I	AATT	4 cut(s)	273, 380, 434, 729
SsiI	CCGC	2 cut(s)	14, 497
SspMI	CTAG	2 cut(s)	305, 623
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	81, 236
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	183, 390, 480
TasI	AATT	4 cut(s)	273, 380, 434, 729
TfiI	GAWTC	3 cut(s)	5, 655, 703
TscAI	CASTG	2 cut(s)	230, 553
TseI	GCWGC	3 cut(s)	25, 228, 461
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	230, 553
VpaK11BI	GGWCC	2 cut(s)	63, 311
XapI	RAATTY	3 cut(s)	273, 380, 729
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	479
XspI	CTAG	2 cut(s)	305, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.