Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

495794 .. 496375

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATTCCCAACATCAACCTGAGCAGCAAGACCCAGAACCCAGAAGCTACTGGAAAAGATGGACCAAGCAGGACTTCTTCTCGGAACCCACTTTCCACAACTTGAGTTCCTCCAAAGACGCCCTCTCCCACACCCCATCTCGCCTCAAGGACCGCCTCCTCAACCGCTTCTCCGACTCCTTCGAGCTCCTCCACCTCCCCAAGCAAAGCGAGCACCACATGCACCGCTGCCTCACCTGGCGGGACCTCATCTGGCTCGGCTTCGGCTCTGTCGTTGGCTCAGGAATTTTCGTCATCTCCTGCGAGGCCACTCTTCTAGCCGGACCAGCCATTGTCTTGTCCTACGCCATCTCCGGCCTCTCGGCTCTGCTCTTTGTCCTCTGCTACACAGAATTCGCCGTCGAAGTTACTGTTGCTGGAGGATCTTTCTCATATCTTCGGATACAATTGGGAGACTTCTTTGCGTTCATTGCTGCTGGGAACATTCTCCTCGAGGCCATGGTCGGCGCGGCTGGGTTGCGCCGGTCATGGACTTCTTACTTGGCAATAATATGGTTACTGGGTAATATTATGGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

193

Amino Acids

21.69

Weight (kDa)

6.36

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	78 - 180	9.4e-09	Amino acid permease
AA_permease	PF00324	83 - 172	5.8e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	491
AccII	CGCG	1 cut(s)	509
AciI	CCGC	5 cut(s)	154, 166, 226, 241, 509
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	285, 392
AcyI	GRCGYC	1 cut(s)	120
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	2 cut(s)	48, 187
AluI	AGCT	2 cut(s)	48, 187
Alw21I	GWGCWC	2 cut(s)	189, 216
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	306, 355, 495
ApeKI	GCWGC	3 cut(s)	25, 228, 473
ApoI	RAATTY	2 cut(s)	285, 392
AspLEI	GCGC	2 cut(s)	509, 522
AspS9I	GGNCC	4 cut(s)	63, 151, 244, 323
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	4 cut(s)	63, 151, 244, 323
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	189, 216
BbvI	GCAGC	3 cut(s)	37, 215, 460
BccI	CCATC	3 cut(s)	54, 145, 356
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	238
BciVI	GTATCC	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	4 cut(s)	26, 229, 474, 510
BlsI	GCNGC	4 cut(s)	27, 230, 475, 511
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	4 cut(s)	63, 151, 244, 323
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	4 cut(s)	63, 151, 244, 323
BmiI	GGNNCC	2 cut(s)	87, 245
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	2 cut(s)	21, 280
BpuEI	CTTGAG	2 cut(s)	124, 131
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 155, 185, 335, 365
Bse118I	RCCGGY	1 cut(s)	522
Bse1I	ACTGG	2 cut(s)	56, 564
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	12, 294
BseNI	ACTGG	2 cut(s)	56, 564
BseRI	GAGGAG	3 cut(s)	149, 179, 479
BseXI	GCAGC	3 cut(s)	37, 215, 460
BseYI	CCCAGC	2 cut(s)	476, 512
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	3 cut(s)	308, 357, 497
BsiHKAI	GWGCWC	2 cut(s)	189, 216
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	321, 354, 523
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	308, 357, 497
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	2 cut(s)	189, 216
Bsp143I	GATC	1 cut(s)	422
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	5 cut(s)	154, 166, 226, 241, 509
BspANI	GGCC	3 cut(s)	308, 357, 497
BspCNI	CTCAG	2 cut(s)	13, 293
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	2 cut(s)	87, 245
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	56, 564
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	1 cut(s)	422
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	21, 280
BstDSI	CCRYGG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	509, 522
BstKTI	GATC	1 cut(s)	425
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 220, 326, 470
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	37, 215, 460
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	308, 357, 497
BtgI	CCRYGG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	2 cut(s)	509, 522
Cfr10I	RCCGGY	1 cut(s)	522
Cfr13I	GGNCC	4 cut(s)	63, 151, 244, 323
CseI	GACGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	220, 499, 528
DdeI	CTNAG	2 cut(s)	21, 280
DpnI	GATC	1 cut(s)	424
DpnII	GATC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	4 cut(s)	63, 151, 244, 323
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	3 cut(s)	223, 502, 531
FaiI	YATR	6 cut(s)	221, 433, 500, 529, 553, 572
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	219, 498, 527
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	4 cut(s)	26, 229, 474, 510
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	26, 229, 474, 510
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	2 cut(s)	508, 521
GluI	GCNGC	4 cut(s)	26, 229, 474, 510
GsaI	CCCAGC	2 cut(s)	480, 516
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	308, 357, 497
HapII	CCGG	3 cut(s)	321, 354, 523
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	509, 522
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	223, 502, 531
Hin6I	GCGC	2 cut(s)	507, 520
HinP1I	GCGC	2 cut(s)	507, 520
HinfI	GANTC	2 cut(s)	5, 176
HpaII	CCGG	3 cut(s)	321, 354, 523
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	85, 175, 441
Hpy188III	TCNNGA	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 220, 326, 470
HpyF3I	CTNAG	2 cut(s)	21, 280
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	223, 502, 531
HspAI	GCGC	2 cut(s)	507, 520
Kzo9I	GATC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	3 cut(s)	37, 215, 460
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	406, 555
MalI	GATC	1 cut(s)	424
MboI	GATC	1 cut(s)	422
MboII	GAAGA	3 cut(s)	70, 305, 428
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	189, 216
MluCI	AATT	3 cut(s)	285, 392, 446
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	321, 354, 523
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	4 cut(s)	211, 220, 326, 470
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	422
NlaIII	CATG	3 cut(s)	223, 502, 531
NlaIV	GGNNCC	2 cut(s)	87, 245
NmeAIII	GCCGAG	2 cut(s)	237, 341
NspI	RCATGY	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	27, 230, 475, 511
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	2 cut(s)	476, 512
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	87, 245
PspPI	GGNCC	4 cut(s)	63, 151, 244, 323
PspPPI	RGGWCCY	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	4 cut(s)	26, 229, 474, 510
Sau3AI	GATC	1 cut(s)	422
Sau96I	GGNCC	4 cut(s)	63, 151, 244, 323
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	189, 216
SetI	ASST	6 cut(s)	22, 50, 189, 198, 239, 249
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	4 cut(s)	63, 151, 244, 323
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	3 cut(s)	103, 146, 491
SmoI	CTYRAG	3 cut(s)	103, 146, 491
Sse9I	AATT	3 cut(s)	285, 392, 446
SsiI	CCGC	5 cut(s)	154, 166, 226, 241, 509
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	183, 402, 492
TasI	AATT	3 cut(s)	285, 392, 446
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	25, 228, 473
TspDTI	ATGAA	1 cut(s)	457
VpaK11BI	GGWCC	4 cut(s)	63, 151, 244, 323
XapI	RAATTY	2 cut(s)	285, 392
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	491
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.