Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430225.1

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

166 .. 882

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggattcccaacagcaaccggagcagcaagacccagaacccagaagctattggaaaagatggaccaagcagaacttcttcccggaacccactttccacaacttgagttcctctaaagacgccctctcccacaccccatctcgcctcaaggaccgcctcctcaactgcttctccgactccttcgagctcctccacctccccaagcaaagcctgcaccacatgcaccgctgcctcacctggcgggacctcatctggctcggcttcggctctgtcgttggctcaggaattttcgttatcgcctgcgaggccactcttctagccggacccgccattgtcttgtcctacgccatctccggcctctcggctctgctctctgtcctctgctacatagaattcaccgtcgaagttactgttgctggaggatctttctcatatcttcggatagaattgggagacttctttgcgttcattgctgctgggaacattctcctcgaggccatggtgggcgcggctgggttgcgtcggtcatggacttcttacttggccagcatgatcaacaccgacaacaccgactttctgaggtttcaggtaagctctctgcctgatgggttcaatatgttggaccctgttgctgttgcggtgcttctggttgctaatggtatagcaatgagtgggacggctcggacttcaatgctcggatttcactggttttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

238

Amino Acids

26.41

Weight (kDa)

5.94

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	491
AccII	CGCG	1 cut(s)	509
AciI	CCGC	6 cut(s)	154, 226, 241, 327, 509, 638
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	285, 392
AcyI	GRCGYC	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	613, 690
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	48, 187, 594
AluI	AGCT	3 cut(s)	48, 187, 594
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	306, 355, 495, 543
ApeKI	GCWGC	3 cut(s)	25, 228, 473
ApoI	RAATTY	2 cut(s)	285, 392
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	5 cut(s)	63, 151, 244, 323, 622
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	226, 388
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	5 cut(s)	63, 151, 244, 323, 622
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	37, 215, 460
BccI	CCATC	4 cut(s)	54, 145, 356, 599
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	1 cut(s)	238
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	26, 229, 474, 510
BlsI	GCNGC	4 cut(s)	27, 230, 475, 511
Bme1390I	CCNGG	2 cut(s)	83, 238
Bme18I	GGWCC	5 cut(s)	63, 151, 244, 323, 622
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	5 cut(s)	63, 151, 244, 323, 622
BmiI	GGNNCC	4 cut(s)	87, 245, 325, 624
BmrFI	CCNGG	2 cut(s)	83, 238
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	280
BpuEI	CTTGAG	2 cut(s)	124, 131
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 155, 185, 335, 365
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	2 cut(s)	468, 672
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	498
BseMI	GCAATG	2 cut(s)	468, 672
BseMII	CTCAG	2 cut(s)	294, 569
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	3 cut(s)	149, 179, 479
BseXI	GCAGC	3 cut(s)	37, 215, 460
BseYI	CCCAGC	2 cut(s)	476, 512
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	4 cut(s)	308, 357, 497, 545
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	4 cut(s)	20, 83, 321, 354
BslFI	GGGAC	2 cut(s)	257, 688
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	257, 688
BsnI	GGCC	4 cut(s)	308, 357, 497, 545
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	422, 552
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	6 cut(s)	154, 226, 241, 327, 509, 638
BspANI	GGCC	4 cut(s)	308, 357, 497, 545
BspCNI	CTCAG	2 cut(s)	293, 570
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	4 cut(s)	87, 245, 325, 624
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	468, 672
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	422, 552
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	400, 412
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	211, 220
BstC8I	GCNNGC	3 cut(s)	212, 301, 547
BstDEI	CTNAG	2 cut(s)	280, 578
BstDSI	CCRYGG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	425, 555
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	422, 552
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	81, 236
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	37, 215, 460
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	4 cut(s)	308, 357, 497, 545
BtgI	CCRYGG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	212, 301, 547
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	5 cut(s)	63, 151, 244, 323, 622
CseI	GACGC	2 cut(s)	128, 509
CviAII	CATG	4 cut(s)	220, 499, 528, 550
DdeI	CTNAG	2 cut(s)	280, 578
DpnI	GATC	2 cut(s)	424, 554
DpnII	GATC	2 cut(s)	422, 552
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	5 cut(s)	63, 151, 244, 323, 622
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	223, 502, 531, 553
FaiI	YATR	8 cut(s)	221, 389, 433, 500, 529, 551, 617, 662
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	2 cut(s)	257, 688
FatI	CATG	4 cut(s)	219, 498, 527, 549
FauI	CCCGC	2 cut(s)	234, 334
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	4 cut(s)	26, 229, 474, 510
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	26, 229, 474, 510
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	4 cut(s)	26, 229, 474, 510
GsaI	CCCAGC	2 cut(s)	480, 516
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	4 cut(s)	308, 357, 497, 545
HapII	CCGG	4 cut(s)	20, 83, 321, 354
HgaI	GACGC	2 cut(s)	128, 509
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	223, 502, 531, 553
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	2 cut(s)	5, 176
HpaII	CCGG	4 cut(s)	20, 83, 321, 354
HphI	GGTGA	2 cut(s)	226, 388
Hpy188I	TCNGA	5 cut(s)	175, 441, 579, 684, 698
Hpy188III	TCNNGA	1 cut(s)	282
Hpy99I	CGWCG	2 cut(s)	404, 525
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	400, 412
HpyCH4V	TGCA	2 cut(s)	214, 223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
HpyF3I	CTNAG	2 cut(s)	280, 578
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	223, 502, 531, 553
HspAI	GCGC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	422, 552
LmnI	GCTCC	2 cut(s)	22, 192
Lsp1109I	GCAGC	3 cut(s)	37, 215, 460
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	424, 554
MboI	GATC	2 cut(s)	422, 552
MboII	GAAGA	3 cut(s)	70, 305, 428
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	3 cut(s)	285, 392, 446
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	198, 600
Mox20I	TGGCCA	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	4 cut(s)	20, 83, 321, 354
MspR9I	CCNGG	2 cut(s)	83, 238
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	6 cut(s)	22, 211, 220, 305, 326, 470
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	2 cut(s)	422, 552
NlaIII	CATG	4 cut(s)	223, 502, 531, 553
NlaIV	GGNNCC	4 cut(s)	87, 245, 325, 624
NmeAIII	GCCGAG	2 cut(s)	237, 341
NspI	RCATGY	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	4 cut(s)	27, 230, 475, 511
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	2 cut(s)	476, 512
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	4 cut(s)	87, 245, 325, 624
PspPI	GGNCC	5 cut(s)	63, 151, 244, 323, 622
PspPPI	RGGWCCY	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	4 cut(s)	26, 229, 474, 510
Sau3AI	GATC	2 cut(s)	422, 552
Sau96I	GGNCC	5 cut(s)	63, 151, 244, 323, 622
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	83, 238
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	8 cut(s)	50, 189, 198, 239, 249, 584, 591, 596
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	5 cut(s)	63, 151, 244, 323, 622
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	3 cut(s)	103, 146, 491
SmoI	CTYRAG	3 cut(s)	103, 146, 491
Sse9I	AATT	3 cut(s)	285, 392, 446
SsiI	CCGC	6 cut(s)	154, 226, 241, 327, 509, 638
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	81, 236
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	400, 412
TaqI	TCGA	3 cut(s)	183, 402, 492
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	285, 392, 446
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	1 cut(s)	710
TseI	GCWGC	3 cut(s)	25, 228, 473
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	1 cut(s)	710
VpaK11BI	GGWCC	5 cut(s)	63, 151, 244, 323, 622
XapI	RAATTY	2 cut(s)	285, 392
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.