Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Reverse (-)

229152 .. 235773

Gene Structure 6622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgttacgaagtttgactttttatacgttaggattttgtgaaaacttccttcatggaaattgtagagcgcgtcgttatgagttcgtcgacatgtggaatgcgaaaatcgaagacgtgaaaccggccacttgggttttcttcgcctcgatctcgtctacaagtctgtggaagaattgcatcaagattcgagttgtcgagggagtggcaaggctgggaagtttggcagcggcgctgcaaatcgccttggtcgaagatgatgattccggccacaataggtggaatttcttgaggggttttgtagcccagaggctgaggaaggttttccccaagaattttgaatatgtgttacaagaggcttccagggatgagttttgctccttcattatagcatcacctatcagccagtcagaagttaatagtgctttagggtgtgggaaatcatcttgtgccttaagaccttttggtttttccataatacctgatgggtctcggggactcctatccgatgcctctctcgtaactatggccttccaacgagagctcgacgctgatcttgaagctagtgaagtgattgaaggaatgagcaatcatgtcagaggtattgttggagcgataaatgaagcatggaaccaacgagccaccagcagtagcgaaccagccaccaacagcagcaaacaggccaccactgcggtgaaccagccagtcggccacagcgaccgccacaccacagtcgtttggaacgccatctcctcctcttgtcatccctacaatcaaattaagctttggaacctagaaagaagagaaatcgaggtagaaatccttctcggtggagaaaagaatacccatttttatcttgcctttggcgacttccgaccgaaaattttggtgggttttgaagctcgagttccggtgatcactctgctaggcaccttgcttgcaaatttaattggagtgaagagattcgatggcgagaagaattttaagtttctcagaatctgtaaattccggccttctactttggaatctgactttgtggaagttaagactattgttggttgggtttgttgttgtgaacaatttggtttcatgacccaatttggggtcggagtaggaggcgcatggggcgcgtctactgtttttagtggtctgctttggtatgctggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

388

Amino Acids

43.18

Weight (kDa)

7.54

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	926
AccI	GTMKAC	3 cut(s)	87, 155, 1130
AccII	CGCG	2 cut(s)	70, 1127
AciI	CCGC	3 cut(s)	227, 689, 718
AcoI	YGGCCR	3 cut(s)	123, 265, 706
AcsI	RAATTY	6 cut(s)	280, 331, 879, 940, 976, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	1098, 1099
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	338, 557, 575, 896
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	689
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	4 cut(s)	541, 560, 781, 899
AluI	AGCT	4 cut(s)	541, 560, 781, 899
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	492
AlwNI	CAGNNNCTG	2 cut(s)	310, 996
Ama87I	CYCGRG	2 cut(s)	489, 900
AoxI	GGCC	6 cut(s)	123, 265, 525, 678, 706, 1007
ApeKI	GCWGC	3 cut(s)	224, 232, 669
ApoI	RAATTY	6 cut(s)	280, 331, 879, 940, 976, 1001
Asp700I	GAANNNNTTC	3 cut(s)	320, 819, 959
AspLEI	GCGC	4 cut(s)	70, 232, 1118, 1127
AsuHPI	GGTGA	3 cut(s)	384, 703, 922
AvaI	CYCGRG	2 cut(s)	489, 900
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	543
BarI	GAAGNNNNNNTAC	2 cut(s)	804, 836
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	219, 236, 681
BccI	CCATC	3 cut(s)	476, 752, 959
BciT130I	CCWGG	1 cut(s)	361
BclI	TGATCA	1 cut(s)	912
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	3 cut(s)	561, 791, 923
BfoI	RGCGCY	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	451
BisI	GCNGC	4 cut(s)	225, 228, 233, 670
BlsI	GCNGC	4 cut(s)	226, 229, 234, 671
Bme1390I	CCNGG	1 cut(s)	361
BmeT110I	CYCGRG	2 cut(s)	489, 900
BmgBI	CACGTC	1 cut(s)	115
BmiI	GGNNCC	3 cut(s)	629, 788, 928
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	186, 398, 496
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	243, 360
BsaWI	WCCGGW	1 cut(s)	907
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	1098, 1099
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	403, 701
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	243, 360
BseGI	GGATG	2 cut(s)	370, 760
BseLI	CCNNNNNNNGG	2 cut(s)	1098, 1099
BseMII	CTCAG	2 cut(s)	302, 1003
BseNI	ACTGG	2 cut(s)	403, 701
BseRI	GAGGAG	2 cut(s)	739, 742
BseXI	GCAGC	3 cut(s)	219, 236, 681
BseYI	CCCAGC	1 cut(s)	211
Bsh1236I	CGCG	2 cut(s)	70, 1127
Bsh1285I	CGRYCG	2 cut(s)	718, 875
BshFI	GGCC	6 cut(s)	125, 267, 527, 680, 708, 1009
BshNI	GGYRCC	1 cut(s)	926
BsiEI	CGRYCG	2 cut(s)	718, 875
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	2 cut(s)	489, 900
BsiSI	CCGG	4 cut(s)	122, 264, 908, 1006
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	1098, 1099
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	6 cut(s)	125, 267, 527, 680, 708, 1009
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	2 cut(s)	489, 900
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	147, 550, 912
BspACI	CCGC	3 cut(s)	227, 689, 718
BspANI	GGCC	6 cut(s)	125, 267, 527, 680, 708, 1009
BspCNI	CTCAG	2 cut(s)	303, 1002
BspFNI	CGCG	2 cut(s)	70, 1127
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	3 cut(s)	629, 788, 928
BspT107I	GGYRCC	1 cut(s)	926
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	403, 701
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	243, 360
BssMI	GATC	3 cut(s)	147, 550, 912
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	730, 1135
Bst6I	CTCTTC	2 cut(s)	793, 950
BstAFI	CTTAAG	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	936
BstDEI	CTNAG	2 cut(s)	311, 989
BstF5I	GGATG	2 cut(s)	370, 760
BstFNI	CGCG	2 cut(s)	70, 1127
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	4 cut(s)	70, 232, 1118, 1127
BstKTI	GATC	3 cut(s)	150, 553, 915
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	147, 550, 912
BstMCI	CGRYCG	2 cut(s)	718, 875
BstMWI	GCNNNNNNNGC	3 cut(s)	686, 1122, 1124
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	359
BstUI	CGCG	2 cut(s)	70, 1127
BstV1I	GCAGC	3 cut(s)	219, 236, 681
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	6 cut(s)	125, 267, 527, 680, 708, 1009
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	370, 760
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	936
CaiI	CAGNNNCTG	2 cut(s)	310, 996
CciI	TCATGA	1 cut(s)	1086
CfoI	GCGC	4 cut(s)	70, 232, 1118, 1127
Cfr10I	RCCGGY	1 cut(s)	121
CseI	GACGC	3 cut(s)	59, 554, 1116
CviAII	CATG	6 cut(s)	53, 91, 590, 624, 1087, 1119
DdeI	CTNAG	2 cut(s)	311, 989
DpnI	GATC	3 cut(s)	149, 552, 914
DpnII	GATC	3 cut(s)	147, 550, 912
EaeI	YGGCCR	3 cut(s)	123, 265, 706
Eam1104I	CTCTTC	2 cut(s)	793, 950
EarI	CTCTTC	2 cut(s)	793, 950
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	492
Eco53kI	GAGCTC	1 cut(s)	541
Eco88I	CYCGRG	2 cut(s)	489, 900
EcoICRI	GAGCTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	6 cut(s)	56, 94, 593, 627, 1090, 1122
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	6 cut(s)	52, 90, 589, 623, 1086, 1118
FbaI	TGATCA	1 cut(s)	912
FblI	GTMKAC	3 cut(s)	87, 155, 1130
Fnu4HI	GCNGC	4 cut(s)	225, 228, 233, 670
FokI	GGATG	2 cut(s)	377, 747
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	225, 228, 233, 670
FspBI	CTAG	3 cut(s)	561, 791, 923
GlaI	GCGC	4 cut(s)	69, 231, 1117, 1126
GluI	GCNGC	4 cut(s)	225, 228, 233, 670
GsaI	CCCAGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	6 cut(s)	125, 267, 527, 680, 708, 1009
HapII	CCGG	4 cut(s)	122, 264, 908, 1006
HgaI	GACGC	3 cut(s)	59, 554, 1116
HhaI	GCGC	4 cut(s)	70, 232, 1118, 1127
Hin1II	CATG	6 cut(s)	56, 94, 593, 627, 1090, 1122
Hin6I	GCGC	4 cut(s)	68, 230, 1116, 1125
HinP1I	GCGC	4 cut(s)	68, 230, 1116, 1125
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	6 cut(s)	184, 260, 495, 960, 993, 1022
HpaII	CCGG	4 cut(s)	122, 264, 908, 1006
HphI	GGTGA	3 cut(s)	384, 703, 922
Hpy166II	GTNNAC	5 cut(s)	88, 156, 694, 1073, 1131
Hpy188I	TCNGA	7 cut(s)	409, 505, 596, 872, 992, 1027, 1106
Hpy188III	TCNNGA	4 cut(s)	181, 286, 554, 1087
Hpy8I	GTNNAC	5 cut(s)	88, 156, 694, 1073, 1131
Hpy99I	CGWCG	3 cut(s)	75, 89, 548
HpyAV	CCTTC	7 cut(s)	59, 310, 388, 538, 569, 830, 1020
HpyCH4III	ACNGT	2 cut(s)	730, 1135
HpyCH4IV	ACGT	2 cut(s)	26, 114
HpyCH4V	TGCA	3 cut(s)	177, 235, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	686, 1122, 1124
HpyF3I	CTNAG	2 cut(s)	311, 989
HpySE526I	ACGT	2 cut(s)	26, 114
Hsp92II	CATG	6 cut(s)	56, 94, 593, 627, 1090, 1122
HspAI	GCGC	4 cut(s)	68, 230, 1116, 1125
Ksp22I	TGATCA	1 cut(s)	912
Kzo9I	GATC	3 cut(s)	147, 550, 912
LmnI	GCTCC	2 cut(s)	380, 608
Lsp1109I	GCAGC	3 cut(s)	219, 236, 681
LweI	GCATC	3 cut(s)	186, 398, 496
MaeI	CTAG	3 cut(s)	561, 791, 923
MaeII	ACGT	2 cut(s)	26, 114
MaeIII	GTNAC	3 cut(s)	3, 345, 517
MalI	GATC	3 cut(s)	149, 552, 914
MboI	GATC	3 cut(s)	147, 550, 912
MboII	GAAGA	7 cut(s)	122, 130, 181, 263, 810, 967, 985
MhlI	GDGCHC	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	4 cut(s)	556, 586, 895, 1084
MroXI	GAANNNNTTC	3 cut(s)	320, 819, 959
MseI	TTAA	6 cut(s)	414, 452, 777, 944, 981, 1041
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	4 cut(s)	122, 264, 908, 1006
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	70, 1127
MwoI	GCNNNNNNNGC	3 cut(s)	686, 1122, 1124
NdeII	GATC	3 cut(s)	147, 550, 912
NlaIII	CATG	6 cut(s)	56, 94, 593, 627, 1090, 1122
NlaIV	GGNNCC	3 cut(s)	629, 788, 928
NspI	RCATGY	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	900
PagI	TCATGA	1 cut(s)	1086
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 711
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	3 cut(s)	320, 819, 959
PfeI	GAWTC	5 cut(s)	184, 260, 960, 993, 1022
PkrI	GCNGC	4 cut(s)	226, 229, 234, 671
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PscI	ACATGT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	629, 788, 928
PspXI	VCTCGAGB	1 cut(s)	900
PstNI	CAGNNNCTG	2 cut(s)	310, 996
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	6 cut(s)	414, 452, 777, 944, 981, 1041
SatI	GCNGC	4 cut(s)	225, 228, 233, 670
Sau3AI	GATC	3 cut(s)	147, 550, 912
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	3 cut(s)	186, 398, 496
Sfr274I	CTCGAG	1 cut(s)	900
SlaI	CTCGAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	286, 451, 900
SmoI	CTYRAG	3 cut(s)	286, 451, 900
SsiI	CCGC	3 cut(s)	227, 689, 718
SspMI	CTAG	3 cut(s)	561, 791, 923
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	730, 1135
TaiI	ACGT	2 cut(s)	29, 117
TaqII	GACCGA	1 cut(s)	889
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	5 cut(s)	184, 260, 960, 993, 1022
Tru1I	TTAA	6 cut(s)	414, 452, 777, 944, 981, 1041
Tru9I	TTAA	6 cut(s)	414, 452, 777, 944, 981, 1041
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	3 cut(s)	224, 232, 669
TspDTI	ATGAA	4 cut(s)	41, 370, 633, 1075
TspRI	CASTG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	451
XapI	RAATTY	6 cut(s)	280, 331, 879, 940, 976, 1001
XceI	RCATGY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	900
XmiI	GTMKAC	3 cut(s)	87, 155, 1130
XmnI	GAANNNNTTC	3 cut(s)	320, 819, 959
XspI	CTAG	3 cut(s)	561, 791, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.