Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Forward (+)

49423307 .. 49427038

Gene Structure 3732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATTCCCAACAGCAACTGGAGCAGCAAGACCCAGAACCCAGTAGCTATTGGAAAAGATGGACCAAGCAGGACTTCTTCCCGGAACCCACTTTCCACAACTTGAGTTCCTCTAAAGACGCCCTCTCCCACACCCCATCTCGCCTCAAGGACCGCCTCCTCAACTGCTTCTCCGACTCCTTCAAGCTCCTCCACCTCCCCAAGCAAAGCGTGCACCACATGCACTGCTGCCTCACCTGGCGGGACCTTATCTGGCTCGACTTCGGCTCTGTCGTTGGCTCAGGAATTTTCGTTATCGCCTGCGAGGCCATTCTTCTAGCCGGACCCGCCATTGTCTTGTCCTACGCCATCTCCGGCCTCTCGGCTCTGCTCTCTGTCCTCTGCTACACAGAATTCGCCGTCGAAGTTACTGTTGCTGGAGGATCTTTCTCATATCTTCGGATAGAATTGGGAGACTTCTTTGTGTTCATTGCTGCTGGGAACATTCTCCTCGAGGCCATGGTGGGTGAGGCTGGGTTGCGTCGGTCATGGACTTCTTACTTGGCCAGCATGATCAACACCGACAACACCGACTTTCTGAGGTTTCAGGTAAGCTCTCTGCCTGATGGGTTCAATCTGTTGGACCCTGTTGCTGTTGCGGTGCTTCTGGTTGCTAATGTATTCGACGTGTTCTCCTTGAGAGACAGAGAATCTCCTCCTGGATTCATGACTAGTCCGAGTTCGAGTCCCTGGCAGGATGATGAAATGGAAAGTTCAAGCATGGATGAGCAGGTTAATTCCAGGATTTTTACGTGGTGTGAAGTGATGCAAACAGAAGTACACGAGGGACCCTACCCGCCAACATCACAATCCGACGACTTGCTCATCAGATTAAAACTTATCATGCAAGCAGGGGTTTTTAAGAGGGAGACCAATCAGCTATGTAAAGAAAACATGGGCCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

316

Amino Acids

35.34

Weight (kDa)

4.75

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	78 - 189	4.6e-08	Amino acid permease
AA_permease	PF00324	83 - 161	7.7e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	760
AciI	CCGC	5 cut(s)	154, 241, 327, 638, 836
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	2 cut(s)	285, 392
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	819
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	3 cut(s)	184, 613, 756
AhlI	ACTAGT	1 cut(s)	710
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	4 cut(s)	236, 697, 728, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	4 cut(s)	48, 187, 594, 919
AluI	AGCT	4 cut(s)	48, 187, 594, 919
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	3 cut(s)	447, 675, 902
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	5 cut(s)	306, 355, 495, 543, 937
ApaLI	GTGCAC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	25, 228, 473
ApoI	RAATTY	2 cut(s)	285, 392
AspS9I	GGNCC	7 cut(s)	63, 151, 244, 323, 622, 827, 937
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	226, 518
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	6 cut(s)	63, 151, 244, 323, 622, 827
BaeGI	GKGCMC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	545
BauI	CACGAG	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	37, 215, 460
BccI	CCATC	4 cut(s)	54, 145, 356, 599
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	4 cut(s)	238, 699, 730, 781
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	447, 675, 902
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	2 cut(s)	317, 711
BfuAI	ACCTGC	1 cut(s)	760
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	26, 229, 474
BlsI	GCNGC	3 cut(s)	27, 230, 475
Bme1390I	CCNGG	5 cut(s)	83, 238, 699, 730, 781
Bme18I	GGWCC	6 cut(s)	63, 151, 244, 323, 622, 827
BmeT110I	CYCGRG	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	7 cut(s)	63, 151, 244, 323, 622, 827, 937
BmiI	GGNNCC	6 cut(s)	87, 245, 325, 624, 828, 829
BmrFI	CCNGG	5 cut(s)	83, 238, 699, 730, 781
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	795
BmuI	ACTGGG	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	41, 438
Bpu10I	CCTNAGC	1 cut(s)	280
BpuEI	CTTGAG	3 cut(s)	124, 131, 697
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	902
BsaJI	CCNNGG	2 cut(s)	498, 728
BsaXI	ACNNNNNCTCC	8 cut(s)	110, 140, 155, 185, 335, 365, 656, 686
Bse1I	ACTGG	2 cut(s)	24, 42
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	4 cut(s)	238, 699, 730, 781
BseDI	CCNNGG	2 cut(s)	498, 728
BseGI	GGATG	2 cut(s)	742, 769
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	294, 569
BseNI	ACTGG	2 cut(s)	24, 42
BseRI	GAGGAG	4 cut(s)	149, 179, 479, 684
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	37, 215, 460
BseYI	CCCAGC	2 cut(s)	476, 512
BshFI	GGCC	5 cut(s)	308, 357, 497, 545, 939
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	83, 321, 354
BslFI	GGGAC	3 cut(s)	257, 711, 840
BsmAI	GTCTC	3 cut(s)	447, 675, 902
BsmFI	GGGAC	3 cut(s)	257, 711, 840
BsnI	GGCC	5 cut(s)	308, 357, 497, 545, 939
Bso31I	GGTCTC	1 cut(s)	902
BsoBI	CYCGRG	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	422, 552
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	5 cut(s)	154, 241, 327, 638, 836
BspANI	GGCC	5 cut(s)	308, 357, 497, 545, 939
BspCNI	CTCAG	2 cut(s)	293, 570
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	6 cut(s)	87, 245, 325, 624, 828, 829
BspMI	ACCTGC	1 cut(s)	760
BspPI	GGATC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	902
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	24, 42
BssECI	CCNNGG	2 cut(s)	498, 728
BssMI	GATC	2 cut(s)	422, 552
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	821
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	821
Bst2UI	CCWGG	4 cut(s)	238, 699, 730, 781
Bst4CI	ACNGT	1 cut(s)	412
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	211, 220
BstBAI	YACGTR	1 cut(s)	792
BstC8I	GCNNGC	4 cut(s)	212, 301, 547, 888
BstDEI	CTNAG	2 cut(s)	280, 578
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	742, 769
BstKTI	GATC	2 cut(s)	425, 555
BstMAI	GTCTC	3 cut(s)	447, 675, 902
BstMBI	GATC	2 cut(s)	422, 552
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 211, 220, 305, 326
BstNI	CCWGG	4 cut(s)	238, 699, 730, 781
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	5 cut(s)	81, 236, 697, 728, 779
BstSLI	GKGCMC	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	37, 215, 460
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	5 cut(s)	308, 357, 497, 545, 939
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	742, 769
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	760
Cac8I	GCNNGC	4 cut(s)	212, 301, 547, 888
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	705
Cfr13I	GGNCC	7 cut(s)	63, 151, 244, 323, 622, 827, 937
CseI	GACGC	2 cut(s)	128, 509
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	8 cut(s)	220, 499, 528, 550, 706, 760, 883, 934
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	2 cut(s)	280, 578
DpnI	GATC	2 cut(s)	424, 554
DpnII	GATC	2 cut(s)	422, 552
EaeI	YGGCCR	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	902
Eco47I	GGWCC	6 cut(s)	63, 151, 244, 323, 622, 827
Eco88I	CYCGRG	1 cut(s)	491
EcoO109I	RGGNCCY	2 cut(s)	244, 827
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	4 cut(s)	236, 697, 728, 779
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	8 cut(s)	223, 502, 531, 553, 709, 763, 886, 937
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	3 cut(s)	257, 711, 840
FatI	CATG	8 cut(s)	219, 498, 527, 549, 705, 759, 882, 933
FauI	CCCGC	3 cut(s)	234, 334, 843
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	26, 229, 474
FokI	GGATG	2 cut(s)	749, 776
Fsp4HI	GCNGC	3 cut(s)	26, 229, 474
FspBI	CTAG	2 cut(s)	317, 711
GluI	GCNGC	3 cut(s)	26, 229, 474
GsaI	CCCAGC	2 cut(s)	480, 516
GsuI	CTGGAG	2 cut(s)	41, 438
HaeIII	GGCC	5 cut(s)	308, 357, 497, 545, 939
HapII	CCGG	3 cut(s)	83, 321, 354
HgaI	GACGC	2 cut(s)	128, 509
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	8 cut(s)	223, 502, 531, 553, 709, 763, 886, 937
HinfI	GANTC	5 cut(s)	5, 176, 689, 702, 724
HpaII	CCGG	3 cut(s)	83, 321, 354
HphI	GGTGA	2 cut(s)	226, 518
Hpy166II	GTNNAC	2 cut(s)	214, 820
Hpy188I	TCNGA	6 cut(s)	175, 441, 579, 717, 853, 869
Hpy188III	TCNNGA	2 cut(s)	282, 706
Hpy8I	GTNNAC	2 cut(s)	214, 820
Hpy99I	CGWCG	4 cut(s)	404, 525, 668, 857
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	666, 791
HpyCH4V	TGCA	4 cut(s)	214, 223, 808, 886
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 211, 220, 305, 326
HpyF3I	CTNAG	2 cut(s)	280, 578
HpySE526I	ACGT	2 cut(s)	666, 791
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	8 cut(s)	223, 502, 531, 553, 709, 763, 886, 937
KflI	GGGWCCC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	422, 552
LmnI	GCTCC	2 cut(s)	22, 192
Lsp1109I	GCAGC	3 cut(s)	37, 215, 460
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	2 cut(s)	317, 711
MaeII	ACGT	2 cut(s)	666, 791
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	424, 554
MboI	GATC	2 cut(s)	422, 552
MboII	GAAGA	3 cut(s)	70, 305, 428
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	4 cut(s)	285, 392, 446, 775
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	170, 733
MmeI	TCCRAC	3 cut(s)	198, 600, 876
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	4 cut(s)	774, 872, 900, 946
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	3 cut(s)	83, 321, 354
MspR9I	CCNGG	5 cut(s)	83, 238, 699, 730, 781
MvaI	CCWGG	4 cut(s)	238, 699, 730, 781
MwoI	GCNNNNNNNGC	5 cut(s)	22, 211, 220, 305, 326
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	2 cut(s)	422, 552
NlaIII	CATG	8 cut(s)	223, 502, 531, 553, 709, 763, 886, 937
NlaIV	GGNNCC	6 cut(s)	87, 245, 325, 624, 828, 829
NmeAIII	GCCGAG	1 cut(s)	341
NspI	RCATGY	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	491
PagI	TCATGA	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	5, 689, 702
PfoI	TCCNGGA	3 cut(s)	81, 697, 779
PkrI	GCNGC	3 cut(s)	27, 230, 475
PleI	GAGTC	2 cut(s)	170, 732
PpsI	GAGTC	2 cut(s)	170, 732
Ppu21I	YACGTR	1 cut(s)	792
PpuMI	RGGWCCY	2 cut(s)	244, 827
Psp5II	RGGWCCY	2 cut(s)	244, 827
Psp6I	CCWGG	4 cut(s)	236, 697, 728, 779
PspFI	CCCAGC	2 cut(s)	476, 512
PspGI	CCWGG	4 cut(s)	236, 697, 728, 779
PspN4I	GGNNCC	6 cut(s)	87, 245, 325, 624, 828, 829
PspPI	GGNCC	7 cut(s)	63, 151, 244, 323, 622, 827, 937
PspPPI	RGGWCCY	2 cut(s)	244, 827
PspXI	VCTCGAGB	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	774, 872, 900, 946
SatI	GCNGC	3 cut(s)	26, 229, 474
Sau3AI	GATC	2 cut(s)	422, 552
Sau96I	GGNCC	7 cut(s)	63, 151, 244, 323, 622, 827, 937
SchI	GAGTC	2 cut(s)	170, 733
ScrFI	CCNGG	5 cut(s)	83, 238, 699, 730, 781
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	795
Sfr274I	CTCGAG	1 cut(s)	491
SinI	GGWCC	6 cut(s)	63, 151, 244, 323, 622, 827
SlaI	CTCGAG	1 cut(s)	491
SmlI	CTYRAG	4 cut(s)	103, 146, 491, 676
SmoI	CTYRAG	4 cut(s)	103, 146, 491, 676
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	4 cut(s)	285, 392, 446, 775
SsiI	CCGC	5 cut(s)	154, 241, 327, 638, 836
SspMI	CTAG	2 cut(s)	317, 711
StyD4I	CCNGG	5 cut(s)	81, 236, 697, 728, 779
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	669, 794
TaqI	TCGA	5 cut(s)	258, 402, 492, 663, 722
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	4 cut(s)	285, 392, 446, 775
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	3 cut(s)	5, 689, 702
Tru1I	TTAA	4 cut(s)	774, 872, 900, 946
Tru9I	TTAA	4 cut(s)	774, 872, 900, 946
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	3 cut(s)	25, 228, 473
TspDTI	ATGAA	3 cut(s)	457, 694, 756
TspRI	CASTG	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	6 cut(s)	63, 151, 244, 323, 622, 827
XapI	RAATTY	2 cut(s)	285, 392
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	491
XspI	CTAG	2 cut(s)	317, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.