Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018564

Physical Location & Seq

Genomic Coordinates Reverse (-)

68246822 .. 68252232

Gene Structure 5411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAAAAAAGTGTGGGCTTCATTGTCTTGCTGCTGTTCCTCTGTTTGTTGCTTTGTACTGTCTACGTTTCTTATTCAGCAATCATCGGTGAGAACAGTAAAAAAGAAGCATATTCTCTCACTTCTGCTACCACTACTGTTCATTCAATTAAATTAGCAATAATGGCGCCTAAACCAAGGATGACAAAAAAAAGAAGGCTCTTAGAAGGTGATCATAGCTCAGCAGATTTATGTCATGCTGCAAGTTATAATGAAAGTTTATCAAGTGAGGGGAATATGCAAGAAATAAAGAATGATCAGACTTTTGTTGCATCTATAGCAGAAAGTTCATTTGACGGCGACAGCATACATGATCAAATCATGGCAAGAACAGCTGTGATGCCTAAACAAGGGACAAGCAGGAGAAGTCTACAGTTGCGAGTAGATAAAAGTGTTAGTAATTCTGATTGTGTGCAATATGTGTCAGAACAAAGTCATAAAAACAAGCGGAGAAAACCTACATCTGCTATAAATTTCAACTGTGGTGCAAGTACGTCCAGCAATCTGGAAGTCGAAATAGCTGCTTCACACGGAAATAGTGTTGGACAAGCATCATATCAAAGAAGAAAATGTGCTGTGATGCCTAAACAGAGGACAGGCAGAAGAAGTCTACAGTTGCGAGCAGATAAAAGTGTTGATAATTCTGATTGTGTGAAATATGTGTCAGAACAAAGTCATAAAAACAAGCGGAGAAAACCTACACCTGCTATAAATTTCAACTATGGTGCAAGTACGTCCAACAATCTAGAAGTCGAAATAGCTGCTTCACACGGAAATAGCATTGGACAAGCATCATATCAAAGAAGAAAATGTGGCTTTAAACCAGAAGATAGACCAGATATTGTGTCGAGAATTTTCAAAATGAAAAATGAGGACCTATCGCTTATGTCAAATCCGGCAAACCATTTGGAGAAATCGAAGCAGATGTCTGTACGATTGAATTTCAGAAAAGAGGACTTCCTCACTCTCATATGTTATTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

9.56

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018564)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150591 RchiOBHm_Chr3g0456041 RchiOBHm_Chr3g0488751 RchiOBHm_Chr5g0027711 RchiOBHm_Chr5g0076981
rosa_rugosa	Rorug01G0424200
rosa_samantha	Rh2AG410800 Rh2BG623700 Rh5AG504600 Rh7BG046000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AarI	CACCTGC	1 cut(s)	751
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	166
AccI	GTMKAC	3 cut(s)	63, 409, 649
AciI	CCGC	2 cut(s)	487, 727
AcsI	RAATTY	4 cut(s)	511, 751, 891, 979
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	4 cut(s)	58, 532, 772, 972
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	147, 517, 757, 898, 979
AluBI	AGCT	4 cut(s)	219, 374, 560, 800
AluI	AGCT	4 cut(s)	219, 374, 560, 800
ApeKI	GCWGC	4 cut(s)	31, 239, 560, 800
ApoI	RAATTY	4 cut(s)	511, 751, 891, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	913
AsuHPI	GGTGA	2 cut(s)	101, 221
AvaII	GGWCC	1 cut(s)	913
BanI	GGYRCC	1 cut(s)	166
BbvI	GCAGC	4 cut(s)	18, 226, 547, 787
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	4 cut(s)	542, 576, 782, 816
BclI	TGATCA	3 cut(s)	211, 295, 352
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	3 cut(s)	315, 410, 650
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	751
BisI	GCNGC	4 cut(s)	32, 240, 561, 801
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	4 cut(s)	33, 241, 562, 802
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	5 cut(s)	320, 369, 599, 609, 839
Bpu1102I	GCTNAGC	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	4 cut(s)	18, 226, 547, 787
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	211, 295, 352
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	487, 727
BspCNI	CTCAG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	211, 295, 352
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	6 cut(s)	61, 98, 139, 414, 521, 654
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	202, 220
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	214, 298, 355
BstMBI	GATC	3 cut(s)	211, 295, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 317, 371
BstSFI	CTRYAG	3 cut(s)	315, 410, 650
BstV1I	GCAGC	4 cut(s)	18, 226, 547, 787
BstXI	CCANNNNNNTGG	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	1 cut(s)	660
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	913
Csp6I	GTAC	4 cut(s)	57, 531, 771, 971
CviAII	CATG	3 cut(s)	236, 350, 361
CviJI	RGCY	8 cut(s)	18, 199, 219, 374, 560, 800, 855, 1023
CviKI_1	RGCY	8 cut(s)	18, 199, 219, 374, 560, 800, 855, 1023
CviQI	GTAC	4 cut(s)	57, 531, 771, 971
DdeI	CTNAG	2 cut(s)	202, 220
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	3 cut(s)	213, 297, 354
DpnII	GATC	3 cut(s)	211, 295, 352
DraI	TTTAAA	1 cut(s)	859
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	913
EcoT14I	CCWWGG	1 cut(s)	176
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	239, 353, 364
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	235, 349, 360
FauNDI	CATATG	1 cut(s)	1010
FbaI	TGATCA	3 cut(s)	211, 295, 352
FblI	GTMKAC	3 cut(s)	63, 409, 649
Fnu4HI	GCNGC	4 cut(s)	32, 240, 561, 801
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	4 cut(s)	32, 240, 561, 801
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	4 cut(s)	32, 240, 561, 801
HaeII	RGCGCY	1 cut(s)	170
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	239, 353, 364
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	2 cut(s)	101, 221
Hpy166II	GTNNAC	3 cut(s)	64, 410, 650
Hpy188I	TCNGA	6 cut(s)	300, 445, 466, 685, 706, 986
Hpy188III	TCNNGA	3 cut(s)	545, 785, 888
Hpy8I	GTNNAC	3 cut(s)	64, 410, 650
HpyAV	CCTTC	2 cut(s)	189, 200
HpyCH4III	ACNGT	6 cut(s)	61, 98, 139, 414, 521, 654
HpyCH4IV	ACGT	3 cut(s)	66, 533, 773
HpyCH4V	TGCA	7 cut(s)	4, 242, 280, 311, 454, 527, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 317, 371
HpyF3I	CTNAG	2 cut(s)	202, 220
HpySE526I	ACGT	3 cut(s)	66, 533, 773
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	239, 353, 364
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
Ksp22I	TGATCA	3 cut(s)	211, 295, 352
Kzo9I	GATC	3 cut(s)	211, 295, 352
LpnPI	CCDG	8 cut(s)	385, 530, 550, 621, 756, 876, 888, 948
Lsp1109I	GCAGC	4 cut(s)	18, 226, 547, 787
LweI	GCATC	5 cut(s)	320, 369, 599, 609, 839
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	3 cut(s)	66, 533, 773
MalI	GATC	3 cut(s)	213, 297, 354
MboI	GATC	3 cut(s)	211, 295, 352
MboII	GAAGA	4 cut(s)	615, 654, 855, 878
MluCI	AATT	8 cut(s)	147, 152, 439, 511, 679, 751, 891, 979
Mly113I	GGCGCC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	562, 801
MnlI	CCTC	6 cut(s)	50, 262, 624, 904, 985, 1010
MseI	TTAA	2 cut(s)	150, 858
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	935
MwoI	GCNNNNNNNGC	3 cut(s)	164, 317, 371
NarI	GGCGCC	1 cut(s)	167
NdeI	CATATG	1 cut(s)	1010
NdeII	GATC	3 cut(s)	211, 295, 352
NlaIII	CATG	3 cut(s)	239, 353, 364
NlaIV	GGNNCC	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	751
PkrI	GCNGC	4 cut(s)	33, 241, 562, 802
PluTI	GGCGCC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	913
PsiI	TTATAA	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	913
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	913
PspPPI	RGGWCCY	1 cut(s)	913
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	4 cut(s)	58, 532, 772, 972
RsaNI	GTAC	4 cut(s)	57, 531, 771, 971
SaqAI	TTAA	2 cut(s)	150, 858
SatI	GCNGC	4 cut(s)	32, 240, 561, 801
Sau3AI	GATC	3 cut(s)	211, 295, 352
Sau96I	GGNCC	1 cut(s)	913
SfaNI	GCATC	5 cut(s)	320, 369, 599, 609, 839
SfcI	CTRYAG	3 cut(s)	315, 410, 650
SfoI	GGCGCC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	913
Sse9I	AATT	8 cut(s)	147, 152, 439, 511, 679, 751, 891, 979
SsiI	CCGC	2 cut(s)	487, 727
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	6 cut(s)	61, 98, 139, 414, 521, 654
TaiI	ACGT	3 cut(s)	69, 536, 776
TaqI	TCGA	4 cut(s)	552, 792, 887, 956
TasI	AATT	8 cut(s)	147, 152, 439, 511, 679, 751, 891, 979
TatI	WGTACW	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	150, 858
Tru9I	TTAA	2 cut(s)	150, 858
TseI	GCWGC	4 cut(s)	31, 239, 560, 800
TspDTI	ATGAA	5 cut(s)	10, 131, 267, 318, 917
TspGWI	ACGGA	2 cut(s)	585, 825
VpaK11BI	GGWCC	1 cut(s)	913
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	4 cut(s)	511, 751, 891, 979
XbaI	TCTAGA	1 cut(s)	784
XmiI	GTMKAC	3 cut(s)	63, 409, 649
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.