Rh7BG046000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018564
Physical Location & Seq
Forward (+)
2989864 .. 2994535
4672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG046000.1

Sequence Viewer

Length: 498 bp
ATGCAAAAAAGTGTGGGCTTCATTGTCTTGCTGCTGTTCCTCTGTTTGTTGCTTTGTACTGTCTCCGTTTCTTATTCAGTAATGGCGCCTAGACCAAGGATGACAAAAAAAAGAAGGCTCTTAGCAAGTGAGGGGAATATGCAAGAAATAAAGAATGATCAGACTTTTGTTGCATCTATAGCAGAAAGTCCATTTCACGACGACAGCATACATGATCAAATCATGGCAAGAACAGCTGTGATGCCTAAACAGAGGACAAGCAGAAGAAGTCTACAGTTGCGAGCAGATAAAAGTGTTGATAATTCTGGTTGTGTGCAATATGTGTCAGAACAAAGTCATAAAAACAAGCGGAGAAAACCTACATCTGCTATAAATTTCAACTGTGGTGCAAGTACATCCAACAATCTAGAAGTCGAAATAGCTGCTTCACACGGAAATAGTATTGGACAAGCATCATATCAAAGAAGAAAATGTGTATTTATAATACACATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

9.75

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 271
AciI CCGC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 373
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 58, 394
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 2 cut(s) 236, 422
AluI AGCT 2 cut(s) 236, 422
Alw26I GTCTC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 31, 422
ApoI RAATTY 1 cut(s) 373
AspLEI GCGC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 18, 409
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BclI TGATCA 2 cut(s) 157, 214
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 90, 407
BfmI CTRYAG 2 cut(s) 177, 272
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 2 cut(s) 32, 423
BlsI GCNGC 2 cut(s) 33, 424
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 3 cut(s) 182, 231, 461
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 105, 395
BseXI GCAGC 2 cut(s) 18, 409
BshNI GGYRCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 157, 214
BspACI CCGC 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 157, 214
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 61, 276, 383
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 105, 395
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 160, 217
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 157, 214
BstMWI GCNNNNNNNGC 2 cut(s) 179, 233
BstSFI CTRYAG 2 cut(s) 177, 272
BstV1I GCAGC 2 cut(s) 18, 409
BtsCI GGATG 2 cut(s) 105, 395
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 57, 393
CviAII CATG 3 cut(s) 212, 223, 490
CviJI RGCY 4 cut(s) 18, 118, 236, 422
CviKI_1 RGCY 4 cut(s) 18, 118, 236, 422
CviQI GTAC 2 cut(s) 57, 393
DdeI CTNAG 1 cut(s) 121
DinI GGCGCC 1 cut(s) 87
DpnI GATC 2 cut(s) 159, 216
DpnII GATC 2 cut(s) 157, 214
Eco130I CCWWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 3 cut(s) 215, 226, 493
FatI CATG 3 cut(s) 211, 222, 489
FbaI TGATCA 2 cut(s) 157, 214
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 32, 423
FokI GGATG 2 cut(s) 112, 382
Fsp4HI GCNGC 2 cut(s) 32, 423
FspBI CTAG 2 cut(s) 90, 407
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 32, 423
HaeII RGCGCY 1 cut(s) 89
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 215, 226, 493
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 162, 328
Hpy188III TCNNGA 2 cut(s) 197, 407
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 3 cut(s) 61, 276, 383
HpyCH4V TGCA 5 cut(s) 4, 142, 173, 316, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 233
HpyF3I CTNAG 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 215, 226, 493
HspAI GCGC 1 cut(s) 86
KasI GGCGCC 1 cut(s) 85
Ksp22I TGATCA 2 cut(s) 157, 214
Kzo9I GATC 2 cut(s) 157, 214
LpnPI CCDG 1 cut(s) 291
Lsp1109I GCAGC 2 cut(s) 18, 409
LweI GCATC 3 cut(s) 182, 231, 461
MaeI CTAG 2 cut(s) 90, 407
MalI GATC 2 cut(s) 159, 216
MboI GATC 2 cut(s) 157, 214
MboII GAAGA 2 cut(s) 276, 477
MluCI AATT 2 cut(s) 301, 373
Mly113I GGCGCC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 50, 124, 246
MseI TTAA 1 cut(s) 496
MspA1I CMGCKG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 179, 233
NarI GGCGCC 1 cut(s) 86
NdeII GATC 2 cut(s) 157, 214
NlaIII CATG 3 cut(s) 215, 226, 493
NlaIV GGNNCC 1 cut(s) 87
PkrI GCNGC 2 cut(s) 33, 424
PluTI GGCGCC 1 cut(s) 89
PsiI TTATAA 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 58, 394
RsaNI GTAC 2 cut(s) 57, 393
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 32, 423
Sau3AI GATC 2 cut(s) 157, 214
SetI ASST 3 cut(s) 238, 361, 424
SfaNI GCATC 3 cut(s) 182, 231, 461
SfcI CTRYAG 2 cut(s) 177, 272
SfoI GGCGCC 1 cut(s) 87
Sse9I AATT 2 cut(s) 301, 373
SsiI CCGC 1 cut(s) 349
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 2 cut(s) 90, 407
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 61, 276, 383
TaqI TCGA 1 cut(s) 414
TasI AATT 2 cut(s) 301, 373
TatI WGTACW 2 cut(s) 56, 392
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TseI GCWGC 2 cut(s) 31, 422
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 2 cut(s) 55, 447
XapI RAATTY 1 cut(s) 373
XbaI TCTAGA 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 2 cut(s) 90, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.