Rorug01G0424200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018564
Physical Location & Seq
Forward (+)
52461730 .. 52462837
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0424200.1

Sequence Viewer

Length: 657 bp
ATGGGGTTTAGAGATTTACATGTTTTTAATATGGCTATGTTGGCAAAACAGGGGTGGAGGATTCTGCAGTATCCGGAATCTTTGATTGCAAGAATGTATAAAGCAAGGTACTTTCCGAATTCTACCTTTTGGGAAGCTGAGAGTCATCCCACACCTTCTTTCTCGTGGAGGAGTATCTTTGCAGCAAGGAGTGTGTTGGAAAAGGGAGCTAGATGGCAAATAGGGGATGGGAAGGATGTTTTGTTGTCTGACCCGTGGGTACCAAGGGTTGCTCCTTTTCGACTTTTACCTATTCAGGGTGGGAGGGACTTGAGCTGGCGTGTTAGTGACTTGTTGACTAGAGAAGGGCGATGGAATGAGGAGTTGGTGTATCAGGTTTGTCATGGTGATGATGTACCTTCTATTCTTTCTATTCCTTTAAGCAGCCGGCGAGTAAATGATCATTGGATTTGGCATTTTGATACTAAGGGTCTCTTCTCTGTTAAAAGTGCTTACCGGCTTTTAATGGAGGAAGTTAGGACTGAGGTTGTTCCTGACCAGATACGAAATTCATGGAAGAAGTTATGGTCGGCTACTTTACCAGGTACAGCTAAAATTTTCTTGTGGAAAGTGTTGAGTAATTGTCTTCCAACTATGGAGAGATTAATTGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.52

Weight (kDa)

9.57

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 159 - 216 1.8e-06 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 259
AccIII TCCGGA 1 cut(s) 73
AcsI RAATTY 3 cut(s) 118, 547, 594
AfaI GTAC 4 cut(s) 110, 261, 396, 586
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 4 cut(s) 137, 209, 315, 590
AluI AGCT 4 cut(s) 137, 209, 315, 590
Alw26I GTCTC 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 182, 423
ApoI RAATTY 3 cut(s) 118, 547, 594
AseI ATTAAT 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 398
BanI GGYRCC 1 cut(s) 259
BauI CACGAG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 194, 435
BccI CCATC 3 cut(s) 207, 221, 345
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 2 cut(s) 210, 339
BfmI CTRYAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 2 cut(s) 183, 424
BlsI GCNGC 2 cut(s) 184, 425
Bme1390I CCNGG 1 cut(s) 582
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 254, 263
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 2 cut(s) 426, 495
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 254, 263
BseGI GGATG 3 cut(s) 145, 232, 241
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 129, 513
BseRI GAGGAG 2 cut(s) 184, 374
BseXI GCAGC 2 cut(s) 194, 435
BshNI GGYRCC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 74, 427, 496
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 476
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 439
BspCNI CTCAG 2 cut(s) 130, 514
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 69
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 476
BsrFI RCCGGY 2 cut(s) 426, 495
BssAI RCCGGY 2 cut(s) 426, 495
BssECI CCNNGG 2 cut(s) 254, 263
BssMI GATC 1 cut(s) 439
BssSI CACGAG 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 317, 428
BstDEI CTNAG 3 cut(s) 138, 465, 522
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 145, 232, 241
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 194, 435
BstV2I GAAGAC 1 cut(s) 617
BsuI GTATCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 3 cut(s) 145, 232, 241
Cac8I GCNNGC 2 cut(s) 317, 428
Cfr10I RCCGGY 2 cut(s) 426, 495
CsiI ACCWGGT 1 cut(s) 580
Csp6I GTAC 4 cut(s) 109, 260, 395, 585
CviAII CATG 3 cut(s) 20, 383, 552
CviJI RGCY 8 cut(s) 35, 137, 209, 315, 426, 499, 572, 590
CviKI_1 RGCY 8 cut(s) 35, 137, 209, 315, 426, 499, 572, 590
CviQI GTAC 4 cut(s) 109, 260, 395, 585
DdeI CTNAG 3 cut(s) 138, 465, 522
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 23, 386, 555
FaiI YATR 8 cut(s) 21, 32, 38, 99, 384, 553, 565, 635
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 19, 382, 551
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 2 cut(s) 183, 424
FokI GGATG 3 cut(s) 132, 239, 248
Fsp4HI GCNGC 2 cut(s) 183, 424
FspBI CTAG 2 cut(s) 210, 339
GluI GCNGC 2 cut(s) 183, 424
HapII CCGG 3 cut(s) 74, 427, 496
Hin1II CATG 3 cut(s) 23, 386, 555
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 3 cut(s) 61, 77, 142
HpaII CCGG 3 cut(s) 74, 427, 496
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 117, 250
Hpy188III TCNNGA 2 cut(s) 74, 533
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 4 cut(s) 165, 226, 338, 408
HpyCH4V TGCA 3 cut(s) 67, 89, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 138, 465, 522
Hsp92II CATG 3 cut(s) 23, 386, 555
Kpn2I TCCGGA 1 cut(s) 73
KpnI GGTACC 1 cut(s) 263
KroI GCCGGC 1 cut(s) 426
KroNI GCCGGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 2 cut(s) 206, 277
Lsp1109I GCAGC 2 cut(s) 194, 435
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 2 cut(s) 210, 339
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 3 cut(s) 466, 568, 617
MluCI AATT 5 cut(s) 118, 547, 594, 619, 645
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 2 cut(s) 177, 653
MnlI CCTC 6 cut(s) 51, 162, 297, 352, 502, 517
MroI TCCGGA 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 426
MseI TTAA 5 cut(s) 27, 419, 483, 503, 644
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 3 cut(s) 74, 427, 496
MspR9I CCNGG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 41
NaeI GCCGGC 1 cut(s) 428
NdeII GATC 1 cut(s) 439
NgoMIV GCCGGC 1 cut(s) 426
NlaIII CATG 3 cut(s) 23, 386, 555
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 61, 77
PkrI GCNGC 2 cut(s) 184, 425
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PscI ACATGT 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 4 cut(s) 110, 261, 396, 586
RsaNI GTAC 4 cut(s) 109, 260, 395, 585
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 5 cut(s) 27, 419, 483, 503, 644
SatI GCNGC 2 cut(s) 183, 424
Sau3AI GATC 1 cut(s) 439
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 582
SexAI ACCWGGT 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 5 cut(s) 118, 547, 594, 619, 645
SspMI CTAG 2 cut(s) 210, 339
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 263
TaqI TCGA 1 cut(s) 280
TasI AATT 5 cut(s) 118, 547, 594, 619, 645
TfiI GAWTC 2 cut(s) 61, 77
Tru1I TTAA 5 cut(s) 27, 419, 483, 503, 644
Tru9I TTAA 5 cut(s) 27, 419, 483, 503, 644
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 182, 423
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 540
VspI ATTAAT 1 cut(s) 644
XapI RAATTY 3 cut(s) 118, 547, 594
XceI RCATGY 1 cut(s) 23
XspI CTAG 2 cut(s) 210, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.