Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018564

Physical Location & Seq

Genomic Coordinates Forward (+)

85420304 .. 85422437

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG504600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCACCTAAACTGAAGATGACAAAAAAAAGAAGGCTCTTAGAAGGTGATCATAGCTCAGCAGATTTGTGTCGTGCTGCAAGTTATAATGAAAGTTTATCAAGTGAGGGGAATATGCGAGAAATAAAGAATGATCAGACTTTTGTTGCATCTATAGCAGAAAGTTCATTTTACGACGACAGCACACATGATCAAATCATGGCAAGAACAGGGGAGTCCCACCCCATGAAAGGGACTATGAGGTTGCGAGTGGCTCTGTATCTGGCACAAGCTTTGGTGTATTGCAGTAGCAAAGGGTGGCCATTGTACCATGATCTTAATGCCTCTAGAGTCCTGTTTGATCAGAGTAGCAAAGATGGCAAGAGCTACAGCTCCAACCTAGCTTACCCTCCAGAATACACCAGGACAGGTATATTAGTCATTGCTTCAGCTAATACAAAACAGAATTCAGTTTTATCACTTACACGCAGTTTCGTGGCGTCTTCCCATAAAAATTCTAAACTTCATCTTGCTCCAAATTTAAAACTTGTTTTGGAAAACAATCTTTGGATGAAAAAAACAATGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

190

Amino Acids

21.28

Weight (kDa)

9.58

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018564)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150591 RchiOBHm_Chr3g0456041 RchiOBHm_Chr3g0488751 RchiOBHm_Chr5g0027711 RchiOBHm_Chr5g0076981
rosa_rugosa	Rorug01G0424200
rosa_samantha	Rh2AG410800 Rh2BG623700 Rh5AG504600 Rh7BG046000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	3 cut(s)	445, 493, 517
AcuI	CTGAAG	2 cut(s)	35, 411
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	230, 231
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	6 cut(s)	57, 272, 366, 372, 383, 431
AluI	AGCT	6 cut(s)	57, 272, 366, 372, 383, 431
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	3 cut(s)	445, 493, 517
AsuHPI	GGTGA	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	403
BclI	TGATCA	4 cut(s)	49, 133, 190, 340
BfaI	CTAG	2 cut(s)	327, 380
BfmI	CTRYAG	2 cut(s)	153, 367
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 231
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	230, 231
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	2 cut(s)	202, 247
BslI	CCNNNNNNNGG	2 cut(s)	230, 231
BsmFI	GGGAC	2 cut(s)	202, 247
BsnI	GGCC	1 cut(s)	301
Bsp143I	GATC	5 cut(s)	49, 133, 190, 313, 340
Bsp1720I	GCTNAGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	420
BssMI	GATC	5 cut(s)	49, 133, 190, 313, 340
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	40, 58
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	5 cut(s)	52, 136, 193, 316, 343
BstMBI	GATC	5 cut(s)	49, 133, 190, 313, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 357
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	2 cut(s)	153, 367
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	555
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	4 cut(s)	188, 199, 226, 311
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	40, 58
DpnI	GATC	5 cut(s)	51, 135, 192, 315, 342
DpnII	GATC	5 cut(s)	49, 133, 190, 313, 340
DraI	TTTAAA	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	35, 411
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	191, 202, 229, 314
FaqI	GGGAC	2 cut(s)	202, 247
FatI	CATG	4 cut(s)	187, 198, 225, 310
FbaI	TGATCA	4 cut(s)	49, 133, 190, 340
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	327, 380
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	4 cut(s)	191, 202, 229, 314
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	2 cut(s)	215, 330
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	138, 345
Hpy188III	TCNNGA	2 cut(s)	327, 392
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	27, 38
HpyCH4V	TGCA	3 cut(s)	80, 149, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 357
HpyF3I	CTNAG	2 cut(s)	40, 58
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	191, 202, 229, 314
Ksp22I	TGATCA	4 cut(s)	49, 133, 190, 340
Kzo9I	GATC	5 cut(s)	49, 133, 190, 313, 340
LmnI	GCTCC	2 cut(s)	377, 517
LpnPI	CCDG	7 cut(s)	195, 248, 347, 388, 393, 405, 415
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	327, 380
MalI	GATC	5 cut(s)	51, 135, 192, 315, 342
MboI	GATC	5 cut(s)	49, 133, 190, 313, 340
MboII	GAAGA	2 cut(s)	28, 474
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	3 cut(s)	445, 493, 517
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	224, 339
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	5 cut(s)	100, 234, 334, 399, 558
Mox20I	TGGCCA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	3 cut(s)	318, 521, 571
Msp20I	TGGCCA	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	155, 357
NdeII	GATC	5 cut(s)	49, 133, 190, 313, 340
NlaIII	CATG	4 cut(s)	191, 202, 229, 314
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	223, 338
PpsI	GAGTC	2 cut(s)	223, 338
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	3 cut(s)	318, 521, 571
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	49, 133, 190, 313, 340
SchI	GAGTC	2 cut(s)	224, 339
ScrFI	CCNGG	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	2 cut(s)	153, 367
Sse9I	AATT	3 cut(s)	445, 493, 517
SspMI	CTAG	2 cut(s)	327, 380
StyD4I	CCNGG	1 cut(s)	401
TasI	AATT	3 cut(s)	445, 493, 517
Tru1I	TTAA	3 cut(s)	318, 521, 571
Tru9I	TTAA	3 cut(s)	318, 521, 571
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	105, 156, 242, 494, 566
XapI	RAATTY	3 cut(s)	445, 493, 517
XbaI	TCTAGA	1 cut(s)	326
XspI	CTAG	2 cut(s)	327, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.