Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001446

Physical Location & Seq

Genomic Coordinates Reverse (-)

70869962 .. 70875611

Gene Structure 5650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGGAGATAGATCTTGAACTGCCCTCATGTGAGCAGGGCAAGTTAGAGACTAGGTTGGATAAAGATGTTAATATTGTGGAGACAAATGTTGAGAAGAAGAGTGAGCATGTTAAAGAAGCTCATGGATTGAGAACAAACGAGAGTGTTTCCGGAGTTGAGGATCAAGATGATGCAAACAATGTTGAAGTTAGAGTAGTTGATAAGGGGGTTGTTAATACTGTGGATGCCACAGATGAGATGAATGTTGAGAAGAGCGGTGAGGCTGTTGGGGAAGCTCGTGGGTCGAGTGCAAACAAAAGTGCTTCTGATTTTCAGGGGCAAGATGATGTGAACAATGTTGTGGCGAATGTAGTTGATAAGGGGTTCGTTGTTCGTGAGCCTGAAAATGGTTTGGAGTTTGAGACTAAGGAAGATGCTTATTCCTACTACAGAGAATATGCTCGCTCGGTGGGGTTTGGAGTCACAATTATAGCCAGTCGGCGCTCTAAAAAAACTGGCAAATTCATTGACATAAAGCTTGCATGTTCTAGATATCGAAAGCAGGAAGATGGCGATACAGAAAATCGAAGAATCCAACTATTGAGCACAGGCTGCAAAGCTGGCTTGCAAATGAAGAAGCGAGAGAATGAAAAATGGTATATACATAGTTTTGTGAAGGAGCATAACCATGAGATGGGGGATGGTTTTATTAATGCTTTAGGGGGAAGAAACAAGAGACCTGCAACTGTTGCTTGTCAGAAGAAGGGTCTGCAGTTCACTTTAGATAAGGAAGATGTCCAAGTAATGTTTGAACAGTTGATGTGTATGCAGGACGAGAATCCCAACTTCTTCTATGCCATAGAGTTTGACAATGACAAACGATTGAGAAGTGTGTTTTGGGTTGATGCAAACGGTAGGCGTGATTATAACAGTTTCTGTGATGTAGTCTTGTTTGATACTCATTATGTTAGAAACAACTATAAAATTCCTTTAGTTCCTATTGTTGGAGTTAATCATCACTTTCAGTACATTTTACTTGGATGTGCATTGCTTGGAGATGAGACTACAGCGGCTTTTGTTTGGTTAATGCGGACATGGCTAAAAGCTGTGGGTGGCCAAGCTCCAAGAGTGGTTATTACTGATCAAGAGAAATACTTGAAGGAAGCTGTAGCAGATGTATTTACTGATGCATGCCATCGTTTTTGTTTATGGCATGTATTGACTAGGATTCATGACAATGTGGGTTCCATAAATGAAGATGCAATATTTCAGGCAAAATTGAACAAATGGATTTACCGGTCTTGGACTGTTCAACAATTTGAAAAGAGATGGTGGAAATTGATTAACAGATTTGAACTAAGGGAAAATGAACGCCTTTGCTTATTCTCATTGTATGAAGATCGGAAATACTGGGCTCCAGCTTATATGCAGGATTCGTGTTCAGCTGGAATGTCAACAGTTGAACGATCTGGAAGTATAACTTCATTTTTTGATAGGTACATATCTCAAGAAGCTATGGTTAAGGATTTTATGGAGCAGTACAAAACATTTTTGAAAGATAGGTACGACATGGAAGCAAATGCTGCTTTTGAAGCACAGAATAAACAACCTGAATTAAGATCACTCTCACCTTTTGAGAAACAAATGTCAACTATATATACAGATACAATATTTAGAAAATTTCAAGGCGAGGTTTTGGGAGTAGATTCTTGTCATTTGCATAAGGAAGGTCAAGATGAAGCAACTGTAATATTCCGAGTTGATGACTTGGAAGAACGGCAGAATTTCATTGTAGCGTGGAATGAACCAGAATTAAGAGTATGCTGTTTATGTCATTCATTTGAATACAAAGGTTTTCTCTGTAGACATGCACTTCTGGTCCTTCATATGTCTGGTGTTTCCAGAATCCCATCCCATTACATTTTGAAGCGCTGGATGAAAGATGCAAGAGTTAGGCACACTGTTAGTGATGTGTCAAAGAGGCTTAACTACAGGGTGCAGCGGTTCAATGATCTGTGTAAATTAGCCGTTAAATTGGGTGAGGAGGGGTCTTTGTCTCCAGAAACTTACCAGATTGCATTTCAAGCATTAGACGAAGTACTGAAACAATGTGTCAATGTCAACAATTCTGTAAGGGGGGTTTCAGTACCCAATCCATCATCTATTCATGGGTCAAATGATCTTGAGGAAGGGAATCACAGCGGCGGAATGGCTAAGTTGTCTAAGAAAAAGAAAACGCACAGAAAAAGAAAGGGGCAAACTGAGCCAGATGGTACACCTATCAGGTTGCAAGATAGCTACCAGCAGATGGAATTGATGAACTCCAGAGCACATAACCTTGATAGTTGTCACGTTCCTCAGCAGGAATTGCAAGGGGAACTTGGTTCTAAAGGTCGTGCTCAGGATAGCTGTTATGGTGCTCAGCAGAGTGCAAGAAATGGGACGGTTGGAGTCAGTATCTCCTATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

816

Amino Acids

93.58

Weight (kDa)

6.33

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	141 - 225	1.5e-20	FAR1 DNA-binding domain
MULE	PF10551	308 - 400	4e-24	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250
fragaria_vesca	FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511
malus_domestica	MD17G1129100.v1.1
prunus_persica	Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1
pyrus_communis	pycom17g12130
rosa_chinensis	RchiOBHm_Chr2g0153551
rosa_laevigata	RLG00000020709
rosa_multiflora	Rmu_sc0003976.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094930
rosa_rugosa	Rorug02G0439500 Rorug02G0439600 Rorug02G0439700 Rorug02G0439800
rosa_samantha	Rh2AG503200 Rh2BG513900 Rh2CG489000 Rh2DG525600
rosa_wichuraiana	Rw2G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
Acc36I	ACCTGC	1 cut(s)	727
AccB7I	CCANNNNNTGG	2 cut(s)	673, 2287
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	1843
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	6 cut(s)	255, 1049, 1069, 1981, 2181, 2184
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	1093
AcsI	RAATTY	4 cut(s)	500, 963, 1658, 1762
AfaI	GTAC	7 cut(s)	1007, 1478, 1520, 1544, 2079, 2127, 2254
AfeI	AGCGCT	1 cut(s)	1910
AfiI	CCNNNNNNNGG	4 cut(s)	386, 673, 983, 2287
AgeI	ACCGGT	1 cut(s)	1275
AjuI	GAANNNNNNNTTGG	2 cut(s)	859, 891
Alw21I	GWGCWC	4 cut(s)	587, 2311, 2380, 2401
Alw26I	GTCTC	6 cut(s)	41, 74, 395, 709, 1034, 2040
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	915
Aor13HI	TCCGGA	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	1910
AoxI	GGCC	1 cut(s)	1093
ApeKI	GCWGC	3 cut(s)	591, 1562, 1978
ApoI	RAATTY	4 cut(s)	500, 963, 1658, 1762
AseI	ATTAAT	1 cut(s)	690
AsiGI	ACCGGT	1 cut(s)	1275
AspLEI	GCGC	2 cut(s)	483, 1911
AspS9I	GGNCC	1 cut(s)	1858
AsuHPI	GGTGA	3 cut(s)	269, 1599, 2030
AvaII	GGWCC	1 cut(s)	1858
BalI	TGGCCA	1 cut(s)	1095
BanII	GRGCYC	1 cut(s)	1396
BauI	CACGAG	1 cut(s)	276
Bbv12I	GWGCWC	4 cut(s)	587, 2311, 2380, 2401
BbvCI	CCTCAGC	1 cut(s)	2337
BbvI	GCAGC	3 cut(s)	578, 1549, 1990
BccI	CCATC	9 cut(s)	542, 667, 674, 1182, 1302, 1897, 2143, 2243, 2281
BceAI	ACGGC	2 cut(s)	1772, 1991
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	6 cut(s)	41, 74, 395, 709, 1034, 2040
BfaI	CTAG	3 cut(s)	51, 528, 1203
BfmI	CTRYAG	6 cut(s)	427, 749, 1044, 1146, 1840, 1969
BfoI	RGCGCY	2 cut(s)	484, 1912
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	5 cut(s)	592, 1050, 1563, 1979, 2182
BlpI	GCTNAGC	1 cut(s)	2400
BlsI	GCNGC	5 cut(s)	593, 1051, 1564, 1980, 2183
BmcAI	AGTACT	1 cut(s)	2079
Bme18I	GGWCC	1 cut(s)	1858
BmgT120I	GGNCC	1 cut(s)	1858
BmiI	GGNNCC	2 cut(s)	1225, 1395
BmrI	ACTGGG	1 cut(s)	1399
BmsI	GCATC	7 cut(s)	160, 214, 403, 874, 1156, 1228, 1912
BmuI	ACTGGG	1 cut(s)	1399
BpmI	CTGGAG	3 cut(s)	1380, 2022, 2287
Bpu10I	CCTNAGC	2 cut(s)	2337, 2379
Bpu1102I	GCTNAGC	1 cut(s)	2400
BpuEI	CTTGAG	2 cut(s)	1470, 2183
BsaI	GGTCTC	1 cut(s)	709
BsaWI	WCCGGW	2 cut(s)	149, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 673, 983, 2287
Bse118I	RCCGGY	1 cut(s)	1275
Bse1I	ACTGG	3 cut(s)	474, 499, 1394
Bse3DI	GCAATG	1 cut(s)	1025
BseAI	TCCGGA	1 cut(s)	149
BseGI	GGATG	5 cut(s)	229, 685, 1025, 1889, 1920
BseLI	CCNNNNNNNGG	4 cut(s)	386, 673, 983, 2287
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	4 cut(s)	2232, 2351, 2393, 2414
BseNI	ACTGG	3 cut(s)	474, 499, 1394
BseRI	GAGGAG	1 cut(s)	2036
BseXI	GCAGC	3 cut(s)	578, 1549, 1990
BsgI	GTGCAG	1 cut(s)	1997
BshFI	GGCC	1 cut(s)	1095
BshTI	ACCGGT	1 cut(s)	1275
BsiHKAI	GWGCWC	4 cut(s)	587, 2311, 2380, 2401
BsiSI	CCGG	2 cut(s)	150, 1276
BslFI	GGGAC	1 cut(s)	2434
BslI	CCNNNNNNNGG	4 cut(s)	386, 673, 983, 2287
BsmAI	GTCTC	6 cut(s)	41, 74, 395, 709, 1034, 2040
BsmFI	GGGAC	1 cut(s)	2434
BsnI	GGCC	1 cut(s)	1095
Bso31I	GGTCTC	1 cut(s)	709
Bsp1286I	GDGCHC	5 cut(s)	587, 1396, 2311, 2380, 2401
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
Bsp1720I	GCTNAGC	1 cut(s)	2400
BspACI	CCGC	6 cut(s)	255, 1049, 1069, 1981, 2181, 2184
BspANI	GGCC	1 cut(s)	1095
BspCNI	CTCAG	4 cut(s)	2233, 2350, 2392, 2413
BspEI	TCCGGA	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	1210
BspLI	GGNNCC	2 cut(s)	1225, 1395
BspMAI	CTGCAG	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	1275
BsrI	ACTGG	3 cut(s)	474, 499, 1394
BssAI	RCCGGY	1 cut(s)	1275
BssMI	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst6I	CTCTTC	2 cut(s)	92, 245
BstAPI	GCANNNNNTGC	4 cut(s)	591, 728, 1562, 2347
BstC8I	GCNNGC	5 cut(s)	442, 519, 601, 605, 1171
BstDEI	CTNAG	8 cut(s)	405, 1337, 2193, 2202, 2241, 2337, 2379, 2400
BstF5I	GGATG	5 cut(s)	229, 685, 1025, 1889, 1920
BstH2I	RGCGCY	2 cut(s)	484, 1912
BstHHI	GCGC	2 cut(s)	483, 1911
BstKTI	GATC	8 cut(s)	13, 163, 1123, 1381, 1448, 1601, 1993, 2161
BstMAI	GTCTC	6 cut(s)	41, 74, 395, 709, 1034, 2040
BstMBI	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
BstMWI	GCNNNNNNNGC	9 cut(s)	591, 600, 728, 1075, 1562, 1571, 2063, 2242, 2347
BstNSI	RCATGY	5 cut(s)	110, 525, 1173, 1196, 1850
BstSFI	CTRYAG	6 cut(s)	427, 749, 1044, 1146, 1840, 1969
BstV1I	GCAGC	3 cut(s)	578, 1549, 1990
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	1095
BtsCI	GGATG	5 cut(s)	229, 685, 1025, 1889, 1920
BtsIMutI	CAGTG	1 cut(s)	1938
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	5 cut(s)	442, 519, 601, 605, 1171
CaiI	CAGNNNCTG	1 cut(s)	915
CciI	TCATGA	1 cut(s)	1210
CfoI	GCGC	2 cut(s)	483, 1911
Cfr10I	RCCGGY	1 cut(s)	1275
Cfr13I	GGNCC	1 cut(s)	1858
Csp6I	GTAC	7 cut(s)	1006, 1477, 1519, 1543, 2078, 2126, 2253
CspAI	ACCGGT	1 cut(s)	1275
CviQI	GTAC	7 cut(s)	1006, 1477, 1519, 1543, 2078, 2126, 2253
DdeI	CTNAG	8 cut(s)	405, 1337, 2193, 2202, 2241, 2337, 2379, 2400
DpnI	GATC	8 cut(s)	12, 162, 1122, 1380, 1447, 1600, 1992, 2160
DpnII	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
EaeI	YGGCCR	1 cut(s)	1093
Eam1104I	CTCTTC	2 cut(s)	92, 245
EarI	CTCTTC	2 cut(s)	92, 245
EciI	GGCGGA	1 cut(s)	2199
Eco24I	GRGCYC	1 cut(s)	1396
Eco31I	GGTCTC	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	1858
Eco47III	AGCGCT	1 cut(s)	1910
EcoRV	GATATC	1 cut(s)	533
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	1396
FalI	AAGNNNNNCTT	4 cut(s)	1444, 1476, 2343, 2375
FaqI	GGGAC	1 cut(s)	2434
FauNDI	CATATG	1 cut(s)	1866
FbaI	TGATCA	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	1843
Fnu4HI	GCNGC	5 cut(s)	592, 1050, 1563, 1979, 2182
FokI	GGATG	5 cut(s)	236, 692, 1032, 1876, 1927
FriOI	GRGCYC	1 cut(s)	1396
Fsp4HI	GCNGC	5 cut(s)	592, 1050, 1563, 1979, 2182
FspBI	CTAG	3 cut(s)	51, 528, 1203
GlaI	GCGC	2 cut(s)	482, 1910
GluI	GCNGC	5 cut(s)	592, 1050, 1563, 1979, 2182
GsuI	CTGGAG	3 cut(s)	1380, 2022, 2287
HaeII	RGCGCY	2 cut(s)	484, 1912
HaeIII	GGCC	1 cut(s)	1095
HapII	CCGG	2 cut(s)	150, 1276
HhaI	GCGC	2 cut(s)	483, 1911
Hin6I	GCGC	2 cut(s)	481, 1909
HinP1I	GCGC	2 cut(s)	481, 1909
HincII	GTYRAC	3 cut(s)	1434, 1629, 2101
HindII	GTYRAC	3 cut(s)	1434, 1629, 2101
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	9 cut(s)	459, 570, 817, 1207, 1412, 1685, 1884, 2173, 2430
HpaII	CCGG	2 cut(s)	150, 1276
HphI	GGTGA	3 cut(s)	269, 1599, 2030
Hpy166II	GTNNAC	7 cut(s)	331, 756, 1434, 1629, 1844, 2101, 2255
Hpy188I	TCNGA	4 cut(s)	307, 738, 1383, 1736
Hpy8I	GTNNAC	7 cut(s)	331, 756, 1434, 1629, 1844, 2101, 2255
HpyAV	CCTTC	6 cut(s)	649, 736, 1132, 1700, 1871, 2162
HpyCH4IV	ACGT	1 cut(s)	2331
HpyF10VI	GCNNNNNNNGC	9 cut(s)	591, 600, 728, 1075, 1562, 1571, 2063, 2242, 2347
HpyF3I	CTNAG	8 cut(s)	405, 1337, 2193, 2202, 2241, 2337, 2379, 2400
HpySE526I	ACGT	1 cut(s)	2331
HspAI	GCGC	2 cut(s)	481, 1909
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	1120
Kzo9I	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	4 cut(s)	658, 1105, 1399, 1513
Lsp1109I	GCAGC	3 cut(s)	578, 1549, 1990
LweI	GCATC	7 cut(s)	160, 214, 403, 874, 1156, 1228, 1912
MaeI	CTAG	3 cut(s)	51, 528, 1203
MaeII	ACGT	1 cut(s)	2331
MaeIII	GTNAC	2 cut(s)	460, 2327
MalI	GATC	8 cut(s)	12, 162, 1122, 1380, 1447, 1600, 1992, 2160
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	5 cut(s)	587, 1396, 2311, 2380, 2401
MlsI	TGGCCA	1 cut(s)	1095
MluNI	TGGCCA	1 cut(s)	1095
MlyI	GAGTC	2 cut(s)	468, 2439
MmeI	TCCRAC	4 cut(s)	36, 598, 964, 2407
MnlI	CCTC	9 cut(s)	34, 151, 253, 1663, 1953, 2014, 2017, 2158, 2346
Mox20I	TGGCCA	1 cut(s)	1095
Mph1103I	ATGCAT	1 cut(s)	1171
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	1095
MslI	CAYNNNNRTG	2 cut(s)	666, 1215
Msp20I	TGGCCA	1 cut(s)	1095
MspA1I	CMGCKG	4 cut(s)	1049, 1424, 1981, 2181
MspI	CCGG	2 cut(s)	150, 1276
MwoI	GCNNNNNNNGC	9 cut(s)	591, 600, 728, 1075, 1562, 1571, 2063, 2242, 2347
NdeI	CATATG	1 cut(s)	1866
NdeII	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
NlaIV	GGNNCC	2 cut(s)	1225, 1395
NmuCI	GTSAC	2 cut(s)	460, 2327
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	5 cut(s)	110, 525, 1173, 1196, 1850
PaeI	GCATGC	1 cut(s)	1173
PagI	TCATGA	1 cut(s)	1210
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	7 cut(s)	570, 817, 1207, 1412, 1685, 1884, 2173
PflMI	CCANNNNNTGG	2 cut(s)	673, 2287
PinAI	ACCGGT	1 cut(s)	1275
PkrI	GCNGC	5 cut(s)	593, 1051, 1564, 1980, 2183
PleI	GAGTC	2 cut(s)	467, 2438
PpsI	GAGTC	2 cut(s)	467, 2438
PshBI	ATTAAT	1 cut(s)	690
PsiI	TTATAA	1 cut(s)	906
PspN4I	GGNNCC	2 cut(s)	1225, 1395
PspPI	GGNCC	1 cut(s)	1858
PstI	CTGCAG	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	915
PsuI	RGATCY	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	1424
RsaI	GTAC	7 cut(s)	1007, 1478, 1520, 1544, 2079, 2127, 2254
RsaNI	GTAC	7 cut(s)	1006, 1477, 1519, 1543, 2078, 2126, 2253
RseI	CAYNNNNRTG	2 cut(s)	666, 1215
SapI	GCTCTTC	1 cut(s)	245
SatI	GCNGC	5 cut(s)	592, 1050, 1563, 1979, 2182
Sau3AI	GATC	8 cut(s)	10, 160, 1120, 1378, 1445, 1598, 1990, 2158
Sau96I	GGNCC	1 cut(s)	1858
ScaI	AGTACT	1 cut(s)	2079
SchI	GAGTC	2 cut(s)	468, 2439
SduI	GDGCHC	5 cut(s)	587, 1396, 2311, 2380, 2401
SfaNI	GCATC	7 cut(s)	160, 214, 403, 874, 1156, 1228, 1912
SfcI	CTRYAG	6 cut(s)	427, 749, 1044, 1146, 1840, 1969
SinI	GGWCC	1 cut(s)	1858
SmiMI	CAYNNNNRTG	2 cut(s)	666, 1215
SmlI	CTYRAG	2 cut(s)	1485, 2162
SmoI	CTYRAG	2 cut(s)	1485, 2162
SphI	GCATGC	1 cut(s)	1173
SsiI	CCGC	6 cut(s)	255, 1049, 1069, 1981, 2181, 2184
SspI	AATATT	4 cut(s)	73, 1245, 1650, 1731
SspMI	CTAG	3 cut(s)	51, 528, 1203
TaiI	ACGT	1 cut(s)	2334
TaqI	TCGA	3 cut(s)	284, 535, 565
TatI	WGTACW	3 cut(s)	1005, 1518, 2077
TauI	GCSGC	2 cut(s)	1052, 2184
TfiI	GAWTC	7 cut(s)	570, 817, 1207, 1412, 1685, 1884, 2173
TscAI	CASTG	1 cut(s)	1945
TseFI	GTSAC	2 cut(s)	460, 2327
TseI	GCWGC	3 cut(s)	591, 1562, 1978
Tsp45I	GTSAC	2 cut(s)	460, 2327
TspRI	CASTG	1 cut(s)	1945
Van91I	CCANNNNNTGG	2 cut(s)	673, 2287
VpaK11BI	GGWCC	1 cut(s)	1858
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	4 cut(s)	500, 963, 1658, 1762
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	5 cut(s)	110, 525, 1173, 1196, 1850
XmiI	GTMKAC	1 cut(s)	1843
XspI	CTAG	3 cut(s)	51, 528, 1203
ZrmI	AGTACT	1 cut(s)	2079
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.