RLG00000020709

Protein FAR1-RELATED SEQUENCE 2 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
67849584 .. 67852970
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020709

Sequence Viewer

Length: 1779 bp
ATGGAGATAGATCTTGAACTGCCCTCATGTGAGCAGGGCAAGTTAGAGACTAGGTTGGATAAAGATGTTAATATTGTGGAGATAAATGTTGAGAAGAAGAGTGAGCATGTTAAAGAAGCTCATGGATTGAGAGGAAACAAGAGTGTTTCCGGAGTTGAGGATCAAGATGATGCGAACAATGTTGAAGTTAGAGTAGTTGATAAGGGGGTTGTTAATACTGTGGATGCCGCAGATGAGATGAATGTTGAGAGGAGCAGTGAGCCTGTTGGGGAAGCTCGTGGGTCGAGTGCAAACAAAAGTGCATCTGATTTTCAGGGGCAAGATGATGTGAACAATGTTGTGGCGAATGTAGTTGATGAGGGGTTTGTTGTTCGTGAGCCTGAAAATGGTTTGGAGTTTGAGACTAAGGAAGATGCTTATTCCTACTACAGAGAATATGCTCGGTCGGTGGGGTTTGGAGTCACAATTATAGCCAGTCGGCGCTCTAAAAAAACTGGAAAATTCATTGACATAAAGCTTGCATGTTCTAGATATCGAAAGCAGGAAGCTGGCGATACAGAAAATCGAAGAATCCAACTATTGAGCACAGGCTGCAAAGCTGGCTTGCAAATGAAGAAGCGAGAGAATGAAAAATGGTATATACATAGTTTTGTGAAGAAGCATAACCATGAGATGGGGGATGGTTTTATTAATGCTTTAGGGGGAAGAAACAAGAGACCTGCAACTGTTGCTTGTCAGAAGAAGGGTCTGCAGTTCACTTTAGGTAAGGAAGATGTCCAAAAGGAAGGTCAAGATGAAGCAACTGTAATATTCCGAGTTGATGACTTGGAAGAACGGCAGAATTTCATTGTAGCATGGAATGAACCAGAATTAAGAGTATGCTGTTTATGTCATTCATTTGAATACAAAGGTTTTCTCTGTAGACATGCACTTCTGGTCCTTCATAAGTCTGGTGTTTCCAGAATCCCATCCCATTACATTTTGAAGCGCTGGATGAAAGATGCAAGAGTTAGGCACACTGTTAGTGATGTGTCAAAGAGGCTTAACTACAGGGTGCAGCGGTTCAATGATCTGTGTAAATTAGCCGTTAAATTGGGTGAGGAGGGGTCTTTGTCTCCGGAAACTTACCAGATTGCATTTCAAGCATTAGACGAAGTACTGAAACAATGTGTCAATGTCAACAATTCTGTAAGGGGAGTTTCAGAACCTAATGCATCATCTATTCATGGGTCAAATGATCTTGAAGAAGGGAATCACAGCGGCGGAATGGCTAAGTTGTCTAAGAAAAAGAAAACGTACAGAAAAAGAAAGGGGCAAACTGAGCCAGATGGTATACCTATCAGGTTGCAAGATAGCTACCAGCAGATGGAATTGATGAACTCCGGAGCACGTAACCTTGATAGTTGTCACGTTCCTCAGCAGGAATTGCAAGGGGAACTTGGTTCTAAAGGTTGTGCTCCGGATAGCTGTTATGGTGCTCAGCAGAGTATGCAAGAAATAGGACGGTTGGACTCAGTATCTTCTATCTGTGATGGTTACTATGGCAATCAACAGGCATCACGGGGACATTTGCATTCATTACCAACCCGTGTTGGTCATTATGGCACCCAACAGAATATGCAAGGAATGTTTCAGGGGCAACTTGGTTTCAGAGCACCAGCTGTGCATAGCTCTTTTGACATAAGGGACACTCTGAAAGATCTGGAACAGTCTGCAGGATCCTCACGCTGTCATGGCAGTACATCAAAGCATCCACTCAATAAGCACTTACCACAGTAG

Protein Analysis

593

Amino Acids

66.21

Weight (kDa)

7.57

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 141 - 225 5.1e-20 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 1604
AccB7I CCANNNNNTGG 2 cut(s) 673, 1366
AccI GTMKAC 2 cut(s) 922, 1333
AccIII TCCGGA 4 cut(s) 149, 1117, 1382, 1459
AciI CCGC 4 cut(s) 228, 1060, 1260, 1263
AclWI GGATC 3 cut(s) 168, 1713, 1726
AcsI RAATTY 2 cut(s) 500, 841
AfaI GTAC 3 cut(s) 1158, 1298, 1741
AfeI AGCGCT 1 cut(s) 989
AfiI CCNNNNNNNGG 3 cut(s) 386, 673, 1366
AgsI TTSAA 7 cut(s) 17, 185, 902, 985, 1066, 1142, 1244
AluBI AGCT 9 cut(s) 119, 275, 517, 548, 599, 1356, 1467, 1661, 1671
AluI AGCT 9 cut(s) 119, 275, 517, 548, 599, 1356, 1467, 1661, 1671
Alw21I GWGCWC 5 cut(s) 587, 1390, 1459, 1480, 1657
Alw26I GTCTC 4 cut(s) 41, 395, 709, 1119
AlwI GGATC 3 cut(s) 168, 1713, 1726
Aor13HI TCCGGA 4 cut(s) 149, 1117, 1382, 1459
Aor51HI AGCGCT 1 cut(s) 989
ApeKI GCWGC 2 cut(s) 591, 1057
ApoI RAATTY 2 cut(s) 500, 841
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
AseI ATTAAT 1 cut(s) 690
AspLEI GCGC 2 cut(s) 483, 990
AspS9I GGNCC 1 cut(s) 937
AsuHPI GGTGA 1 cut(s) 1109
AvaII GGWCC 1 cut(s) 937
BamHI GGATCC 1 cut(s) 1718
BanI GGYRCC 1 cut(s) 1604
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 5 cut(s) 587, 1390, 1459, 1480, 1657
BbvCI CCTCAGC 1 cut(s) 1416
BbvI GCAGC 2 cut(s) 578, 1069
BccI CCATC 6 cut(s) 667, 674, 976, 1322, 1360, 1526
BceAI ACGGC 2 cut(s) 851, 1070
BcoDI GTCTC 4 cut(s) 41, 395, 709, 1119
BfaI CTAG 2 cut(s) 51, 528
BfmI CTRYAG 5 cut(s) 427, 749, 919, 1048, 1713
BfoI RGCGCY 2 cut(s) 484, 991
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 2 cut(s) 10, 1699
BisI GCNGC 4 cut(s) 228, 592, 1058, 1261
BlpI GCTNAGC 1 cut(s) 1479
BlsI GCNGC 4 cut(s) 229, 593, 1059, 1262
BmcAI AGTACT 1 cut(s) 1158
Bme18I GGWCC 1 cut(s) 937
BmgT120I GGNCC 1 cut(s) 937
BmiI GGNNCC 2 cut(s) 1606, 1720
BmsI GCATC 8 cut(s) 160, 214, 311, 403, 991, 1223, 1565, 1759
Bpu10I CCTNAGC 1 cut(s) 1416
Bpu1102I GCTNAGC 1 cut(s) 1479
BsaAI YACGTR 1 cut(s) 1391
BsaI GGTCTC 1 cut(s) 709
BsaWI WCCGGW 4 cut(s) 149, 1117, 1382, 1459
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 673, 1366
Bse1I ACTGG 2 cut(s) 474, 499
BseAI TCCGGA 4 cut(s) 149, 1117, 1382, 1459
BseGI GGATG 5 cut(s) 229, 685, 968, 999, 1750
BseLI CCNNNNNNNGG 3 cut(s) 386, 673, 1366
BseMII CTCAG 4 cut(s) 1311, 1430, 1493, 1527
BseNI ACTGG 2 cut(s) 474, 499
BseRI GAGGAG 2 cut(s) 265, 1115
BseXI GCAGC 2 cut(s) 578, 1069
BsgI GTGCAG 1 cut(s) 1076
Bsh1285I CGRYCG 1 cut(s) 446
BshNI GGYRCC 1 cut(s) 1604
BsiEI CGRYCG 1 cut(s) 446
BsiHKAI GWGCWC 5 cut(s) 587, 1390, 1459, 1480, 1657
BsiSI CCGG 4 cut(s) 150, 1118, 1383, 1460
BslFI GGGAC 2 cut(s) 1578, 1700
BslI CCNNNNNNNGG 3 cut(s) 386, 673, 1366
BsmAI GTCTC 4 cut(s) 41, 395, 709, 1119
BsmFI GGGAC 2 cut(s) 1578, 1700
BsmI GAATGC 1 cut(s) 1573
Bso31I GGTCTC 1 cut(s) 709
Bsp1286I GDGCHC 5 cut(s) 587, 1390, 1459, 1480, 1657
Bsp13I TCCGGA 4 cut(s) 149, 1117, 1382, 1459
Bsp143I GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
Bsp1720I GCTNAGC 1 cut(s) 1479
BspACI CCGC 4 cut(s) 228, 1060, 1260, 1263
BspCNI CTCAG 4 cut(s) 1312, 1429, 1492, 1526
BspEI TCCGGA 4 cut(s) 149, 1117, 1382, 1459
BspLI GGNNCC 2 cut(s) 1606, 1720
BspMAI CTGCAG 2 cut(s) 753, 1717
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 3 cut(s) 168, 1713, 1726
BspT107I GGYRCC 1 cut(s) 1604
BspTNI GGTCTC 1 cut(s) 709
BsrI ACTGG 2 cut(s) 474, 499
BssMI GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
BssNAI GTATAC 1 cut(s) 1334
BssSI CACGAG 1 cut(s) 276
Bst1107I GTATAC 1 cut(s) 1334
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 7 cut(s) 220, 727, 805, 1021, 1506, 1710, 1776
Bst6I CTCTTC 1 cut(s) 92
BstAPI GCANNNNNTGC 4 cut(s) 591, 728, 1426, 1489
BstBAI YACGTR 1 cut(s) 1391
BstC8I GCNNGC 4 cut(s) 519, 550, 601, 605
BstDEI CTNAG 7 cut(s) 405, 1272, 1281, 1320, 1416, 1479, 1513
BstF5I GGATG 5 cut(s) 229, 685, 968, 999, 1750
BstH2I RGCGCY 2 cut(s) 484, 991
BstHHI GCGC 2 cut(s) 483, 990
BstKTI GATC 6 cut(s) 13, 163, 1072, 1240, 1702, 1721
BstMAI GTCTC 4 cut(s) 41, 395, 709, 1119
BstMBI GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
BstMCI CGRYCG 1 cut(s) 446
BstMWI GCNNNNNNNGC 8 cut(s) 591, 600, 728, 1142, 1321, 1426, 1489, 1734
BstNSI RCATGY 3 cut(s) 110, 525, 929
BstSFI CTRYAG 5 cut(s) 427, 749, 919, 1048, 1713
BstV1I GCAGC 2 cut(s) 578, 1069
BstX2I RGATCY 3 cut(s) 10, 1699, 1718
BstYI RGATCY 3 cut(s) 10, 1699, 1718
BstZ17I GTATAC 1 cut(s) 1334
BtsCI GGATG 5 cut(s) 229, 685, 968, 999, 1750
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 262, 1017
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 4 cut(s) 519, 550, 601, 605
CfoI GCGC 2 cut(s) 483, 990
Cfr13I GGNCC 1 cut(s) 937
Csp6I GTAC 3 cut(s) 1157, 1297, 1740
CviAII CATG 9 cut(s) 27, 107, 122, 522, 668, 855, 926, 1226, 1733
CviQI GTAC 3 cut(s) 1157, 1297, 1740
DdeI CTNAG 7 cut(s) 405, 1272, 1281, 1320, 1416, 1479, 1513
DpnI GATC 6 cut(s) 12, 162, 1071, 1239, 1701, 1720
DpnII GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 1278
Eco31I GGTCTC 1 cut(s) 709
Eco32I GATATC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 937
Eco47III AGCGCT 1 cut(s) 989
EcoRV GATATC 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 1216
FaeI CATG 9 cut(s) 30, 110, 125, 525, 671, 858, 929, 1229, 1736
FalI AAGNNNNNCTT 2 cut(s) 1422, 1454
FaqI GGGAC 2 cut(s) 1578, 1700
FatI CATG 9 cut(s) 26, 106, 121, 521, 667, 854, 925, 1225, 1732
FblI GTMKAC 2 cut(s) 922, 1333
Fnu4HI GCNGC 4 cut(s) 228, 592, 1058, 1261
FokI GGATG 5 cut(s) 236, 692, 955, 1006, 1737
Fsp4HI GCNGC 4 cut(s) 228, 592, 1058, 1261
FspBI CTAG 2 cut(s) 51, 528
GlaI GCGC 2 cut(s) 482, 989
GluI GCNGC 4 cut(s) 228, 592, 1058, 1261
HaeII RGCGCY 2 cut(s) 484, 991
HapII CCGG 4 cut(s) 150, 1118, 1383, 1460
HhaI GCGC 2 cut(s) 483, 990
Hin1II CATG 9 cut(s) 30, 110, 125, 525, 671, 858, 929, 1229, 1736
Hin6I GCGC 2 cut(s) 481, 988
HinP1I GCGC 2 cut(s) 481, 988
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 459, 570, 963, 1252, 1511
HpaII CCGG 4 cut(s) 150, 1118, 1383, 1460
HphI GGTGA 1 cut(s) 1109
Hpy166II GTNNAC 5 cut(s) 331, 756, 923, 1180, 1334
Hpy188I TCNGA 6 cut(s) 307, 738, 815, 1204, 1652, 1695
Hpy8I GTNNAC 5 cut(s) 331, 756, 923, 1180, 1334
HpyAV CCTTC 4 cut(s) 736, 779, 950, 1241
HpyCH4III ACNGT 7 cut(s) 220, 727, 805, 1021, 1506, 1710, 1776
HpyCH4IV ACGT 3 cut(s) 1295, 1390, 1410
HpyF10VI GCNNNNNNNGC 8 cut(s) 591, 600, 728, 1142, 1321, 1426, 1489, 1734
HpyF3I CTNAG 7 cut(s) 405, 1272, 1281, 1320, 1416, 1479, 1513
HpySE526I ACGT 3 cut(s) 1295, 1390, 1410
Hsp92II CATG 9 cut(s) 30, 110, 125, 525, 671, 858, 929, 1229, 1736
HspAI GCGC 2 cut(s) 481, 988
Kpn2I TCCGGA 4 cut(s) 149, 1117, 1382, 1459
Kzo9I GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
LmnI GCTCC 3 cut(s) 252, 1385, 1462
Lsp1109I GCAGC 2 cut(s) 578, 1069
LweI GCATC 8 cut(s) 160, 214, 311, 403, 991, 1223, 1565, 1759
MaeI CTAG 2 cut(s) 51, 528
MaeII ACGT 3 cut(s) 1295, 1390, 1410
MaeIII GTNAC 4 cut(s) 460, 1391, 1406, 1535
MalI GATC 6 cut(s) 12, 162, 1071, 1239, 1701, 1720
MboI GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
MflI RGATCY 3 cut(s) 10, 1699, 1718
MhlI GDGCHC 5 cut(s) 587, 1390, 1459, 1480, 1657
MluCI AATT 9 cut(s) 465, 500, 841, 869, 1079, 1091, 1183, 1370, 1424
MlyI GAGTC 2 cut(s) 468, 1505
MmeI TCCRAC 3 cut(s) 36, 598, 1488
Mph1103I ATGCAT 1 cut(s) 1216
MroI TCCGGA 4 cut(s) 149, 1117, 1382, 1459
MseI TTAA 7 cut(s) 69, 111, 213, 690, 872, 1044, 1089
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 3 cut(s) 1060, 1260, 1661
MspI CCGG 4 cut(s) 150, 1118, 1383, 1460
Mva1269I GAATGC 1 cut(s) 1573
MwoI GCNNNNNNNGC 8 cut(s) 591, 600, 728, 1142, 1321, 1426, 1489, 1734
NdeII GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
NlaIII CATG 9 cut(s) 30, 110, 125, 525, 671, 858, 929, 1229, 1736
NlaIV GGNNCC 2 cut(s) 1606, 1720
NmuCI GTSAC 2 cut(s) 460, 1406
NsiI ATGCAT 1 cut(s) 1216
NspI RCATGY 3 cut(s) 110, 525, 929
PctI GAATGC 1 cut(s) 1573
PfeI GAWTC 3 cut(s) 570, 963, 1252
PflMI CCANNNNNTGG 2 cut(s) 673, 1366
PkrI GCNGC 4 cut(s) 229, 593, 1059, 1262
PleI GAGTC 2 cut(s) 467, 1505
PpsI GAGTC 2 cut(s) 467, 1505
Ppu21I YACGTR 1 cut(s) 1391
PshBI ATTAAT 1 cut(s) 690
PspN4I GGNNCC 2 cut(s) 1606, 1720
PspPI GGNCC 1 cut(s) 937
PstI CTGCAG 2 cut(s) 753, 1717
PsuI RGATCY 3 cut(s) 10, 1699, 1718
PvuII CAGCTG 1 cut(s) 1661
RsaI GTAC 3 cut(s) 1158, 1298, 1741
RsaNI GTAC 3 cut(s) 1157, 1297, 1740
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 7 cut(s) 69, 111, 213, 690, 872, 1044, 1089
SatI GCNGC 4 cut(s) 228, 592, 1058, 1261
Sau3AI GATC 6 cut(s) 10, 160, 1069, 1237, 1699, 1718
Sau96I GGNCC 1 cut(s) 937
ScaI AGTACT 1 cut(s) 1158
SchI GAGTC 2 cut(s) 468, 1505
SduI GDGCHC 5 cut(s) 587, 1390, 1459, 1480, 1657
SfaNI GCATC 8 cut(s) 160, 214, 311, 403, 991, 1223, 1565, 1759
SfcI CTRYAG 5 cut(s) 427, 749, 919, 1048, 1713
SinI GGWCC 1 cut(s) 937
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 9 cut(s) 465, 500, 841, 869, 1079, 1091, 1183, 1370, 1424
SsiI CCGC 4 cut(s) 228, 1060, 1260, 1263
SspI AATATT 2 cut(s) 73, 810
SspMI CTAG 2 cut(s) 51, 528
TaaI ACNGT 7 cut(s) 220, 727, 805, 1021, 1506, 1710, 1776
TaiI ACGT 3 cut(s) 1298, 1393, 1413
TaqI TCGA 3 cut(s) 284, 535, 565
TaqII GACCGA 1 cut(s) 432
TasI AATT 9 cut(s) 465, 500, 841, 869, 1079, 1091, 1183, 1370, 1424
TatI WGTACW 2 cut(s) 1156, 1739
TauI GCSGC 2 cut(s) 230, 1263
TfiI GAWTC 3 cut(s) 570, 963, 1252
Tru1I TTAA 7 cut(s) 69, 111, 213, 690, 872, 1044, 1089
Tru9I TTAA 7 cut(s) 69, 111, 213, 690, 872, 1044, 1089
TscAI CASTG 2 cut(s) 262, 1024
TseFI GTSAC 2 cut(s) 460, 1406
TseI GCWGC 2 cut(s) 591, 1057
Tsp45I GTSAC 2 cut(s) 460, 1406
TspRI CASTG 2 cut(s) 262, 1024
Van91I CCANNNNNTGG 2 cut(s) 673, 1366
VpaK11BI GGWCC 1 cut(s) 937
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 2 cut(s) 500, 841
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 3 cut(s) 110, 525, 929
XmiI GTMKAC 2 cut(s) 922, 1333
XspI CTAG 2 cut(s) 51, 528
ZrmI AGTACT 1 cut(s) 1158
Zsp2I ATGCAT 1 cut(s) 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.