Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001446

Physical Location & Seq

Genomic Coordinates Reverse (-)

72592257 .. 72595828

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG503200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGATAGATCTTGAACTGCCCTCATGTGAGCAGGGCAAGTTAGAGACTAGGTTGGATAAAGATGTTAATATTGTGGAGATAAATGTTGAGAAGAAGAGTGAGCATGTTAAAGAAGCTCATGGATTGAGAGCAAACGAGAGTGTTTCCGGAGTTGAGGATCAAGATGATGCGAACAATGTTGAAGTTAGAGTAGTTGATAAGGGGGTTGTTAATACTGTGGATGCCGCAGATGAGATGAATGTTGAGAAGAGCAGTGAGCCTGTTGGGGAAGCTCGTGGGTCGAGTGCAAACAAAAGTGCTTCTGATTTTCAGGGGCAAGATGATGTGAACAATGTTGTGGCAAATGTAGTTGATAAGGGGTTTGTTGTTCGTGAGCCTGAAAATGGTTTGGAGTTTGAGACTAAGGAAGATGCTTATTCCTACTACAGAGAATATGCTCGGTCGGTGGGGTTTGGAGTCACAATTATAGCCAGTCGGCGCTCTAAAAAAACTGGAAAATTCATTGACATAAAGCTTGCATGTTCTAGATATCGAAAGCAGGAAGCTGGCGATACAGAAAATCGAAGAATCCAACTATTGAGCACAGGCTGCAAAGCTGGCTTGCAAATGAAGAAGCGAGAGAATGAAAAATGGTATATACATAGTTTTGTGAAGGAGCATAACCATGAGATGGGGGATGGTTTTATTAATGCTTTAGGGGGAAGAAACAAGAGACCTGCAACTGTTGCTTGTCAGAAGAAGGGTCTGCAGTTCACTTTAGATAAGGAAGATGTCCAACGCTGGATGAAAGATGCAAGAGTTAGGCACACTGTTAGTGATGTGTCAAAGAGGCTTAACTACAGGGTGCAGCGGTTCAATGATCTGTGTAAATTAGCCGTTAAATTGGGTGAGGAGGGGTCTTTGTCTCCAGAAACTTACCAGATTGCATTTCAAGCATTAGACGAAGTACTGAAACAATGTGTCAATGTCAACAATTCTGTAAGGGGGGTTTCAGAACCCAATACATCATCTATTCATGGGTCAAATGATCTTGAGGAAGGGAATCACAGCGGCGGAATGGCTAAGTTGTCTAAGAAAAAGAAAACGCACAGAAAAAGAAAGGGGCAAACTGAGCCAGATGGTACACCTATCAGGTTGCAAGATAGCTACCAGCAGATGGAATTGATGAACTCCGGAGCACGTAACCTTGATAGTTGTCACGTTCCTCAGCAGGAATTGCAAGGGGTAAAATCTGAAATAGCTATGTTATCCCAATATATGGCAATGAATATGTCAAGTATAAGAGTTGATATAATTTTTTCATATGGCCTTTTATATGTATTTGTAGGAACTTGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

447

Amino Acids

50.23

Weight (kDa)

6.59

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	141 - 225	1.1e-20	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250
fragaria_vesca	FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511
malus_domestica	MD17G1129100.v1.1
prunus_persica	Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1
pyrus_communis	pycom17g12130
rosa_chinensis	RchiOBHm_Chr2g0153551
rosa_laevigata	RLG00000020709
rosa_multiflora	Rmu_sc0003976.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094930
rosa_rugosa	Rorug02G0439500 Rorug02G0439600 Rorug02G0439700 Rorug02G0439800
rosa_samantha	Rh2AG503200 Rh2BG513900 Rh2CG489000 Rh2DG525600
rosa_wichuraiana	Rw2G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AccB7I	CCANNNNNTGG	3 cut(s)	673, 1159, 1261
AccIII	TCCGGA	2 cut(s)	149, 1175
AciI	CCGC	4 cut(s)	228, 853, 1053, 1056
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	2 cut(s)	951, 1126
AfiI	CCNNNNNNNGG	4 cut(s)	386, 673, 1159, 1261
AgsI	TTSAA	4 cut(s)	17, 185, 859, 935
AluBI	AGCT	7 cut(s)	119, 275, 517, 548, 599, 1149, 1244
AluI	AGCT	7 cut(s)	119, 275, 517, 548, 599, 1149, 1244
Alw21I	GWGCWC	2 cut(s)	587, 1183
Alw26I	GTCTC	4 cut(s)	41, 395, 709, 912
AlwI	GGATC	1 cut(s)	168
Aor13HI	TCCGGA	2 cut(s)	149, 1175
AoxI	GGCC	1 cut(s)	1309
ApeKI	GCWGC	2 cut(s)	591, 850
ApoI	RAATTY	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	902
BauI	CACGAG	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	587, 1183
BbvCI	CCTCAGC	1 cut(s)	1209
BbvI	GCAGC	2 cut(s)	578, 862
BccI	CCATC	4 cut(s)	667, 674, 1115, 1153
BceAI	ACGGC	1 cut(s)	863
BcoDI	GTCTC	4 cut(s)	41, 395, 709, 912
BfaI	CTAG	2 cut(s)	51, 528
BfmI	CTRYAG	3 cut(s)	427, 749, 841
BfoI	RGCGCY	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	727
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	4 cut(s)	228, 592, 851, 1054
BlsI	GCNGC	4 cut(s)	229, 593, 852, 1055
BmcAI	AGTACT	1 cut(s)	951
BmsI	GCATC	4 cut(s)	160, 214, 403, 784
BpmI	CTGGAG	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	1209
BpuEI	CTTGAG	1 cut(s)	1055
BsaAI	YACGTR	1 cut(s)	1184
BsaI	GGTCTC	1 cut(s)	709
BsaWI	WCCGGW	2 cut(s)	149, 1175
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 673, 1159, 1261
Bse1I	ACTGG	2 cut(s)	474, 499
Bse3DI	GCAATG	1 cut(s)	1272
BseAI	TCCGGA	2 cut(s)	149, 1175
BseGI	GGATG	3 cut(s)	229, 685, 792
BseLI	CCNNNNNNNGG	4 cut(s)	386, 673, 1159, 1261
BseMI	GCAATG	1 cut(s)	1272
BseMII	CTCAG	2 cut(s)	1104, 1223
BseNI	ACTGG	2 cut(s)	474, 499
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	2 cut(s)	578, 862
BsgI	GTGCAG	1 cut(s)	869
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	1311
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	587, 1183
BsiSI	CCGG	2 cut(s)	150, 1176
BslI	CCNNNNNNNGG	4 cut(s)	386, 673, 1159, 1261
BsmAI	GTCTC	4 cut(s)	41, 395, 709, 912
BsnI	GGCC	1 cut(s)	1311
Bso31I	GGTCTC	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	587, 1183
Bsp13I	TCCGGA	2 cut(s)	149, 1175
Bsp143I	GATC	4 cut(s)	10, 160, 862, 1030
BspACI	CCGC	4 cut(s)	228, 853, 1053, 1056
BspANI	GGCC	1 cut(s)	1311
BspCNI	CTCAG	2 cut(s)	1105, 1222
BspEI	TCCGGA	2 cut(s)	149, 1175
BspMAI	CTGCAG	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	1272
BsrI	ACTGG	2 cut(s)	474, 499
BssMI	GATC	4 cut(s)	10, 160, 862, 1030
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	220, 727, 814
Bst6I	CTCTTC	2 cut(s)	92, 245
BstAPI	GCANNNNNTGC	3 cut(s)	591, 728, 1219
BstBAI	YACGTR	1 cut(s)	1184
BstC8I	GCNNGC	4 cut(s)	519, 550, 601, 605
BstDEI	CTNAG	5 cut(s)	405, 1065, 1074, 1113, 1209
BstF5I	GGATG	3 cut(s)	229, 685, 792
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	4 cut(s)	13, 163, 865, 1033
BstMAI	GTCTC	4 cut(s)	41, 395, 709, 912
BstMBI	GATC	4 cut(s)	10, 160, 862, 1030
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	6 cut(s)	591, 600, 728, 935, 1114, 1219
BstNSI	RCATGY	2 cut(s)	110, 525
BstSFI	CTRYAG	3 cut(s)	427, 749, 841
BstV1I	GCAGC	2 cut(s)	578, 862
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	1311
BtsCI	GGATG	3 cut(s)	229, 685, 792
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 810
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	4 cut(s)	519, 550, 601, 605
CfoI	GCGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	950, 1125
CviAII	CATG	6 cut(s)	27, 107, 122, 522, 668, 1019
CviQI	GTAC	2 cut(s)	950, 1125
DdeI	CTNAG	5 cut(s)	405, 1065, 1074, 1113, 1209
DpnI	GATC	4 cut(s)	12, 162, 864, 1032
DpnII	GATC	4 cut(s)	10, 160, 862, 1030
Eam1104I	CTCTTC	2 cut(s)	92, 245
EarI	CTCTTC	2 cut(s)	92, 245
EciI	GGCGGA	1 cut(s)	1071
Eco31I	GGTCTC	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	533
FaeI	CATG	6 cut(s)	30, 110, 125, 525, 671, 1022
FatI	CATG	6 cut(s)	26, 106, 121, 521, 667, 1018
FauNDI	CATATG	1 cut(s)	1306
Fnu4HI	GCNGC	4 cut(s)	228, 592, 851, 1054
FokI	GGATG	3 cut(s)	236, 692, 799
Fsp4HI	GCNGC	4 cut(s)	228, 592, 851, 1054
FspBI	CTAG	2 cut(s)	51, 528
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	4 cut(s)	228, 592, 851, 1054
GsuI	CTGGAG	1 cut(s)	894
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	1311
HapII	CCGG	2 cut(s)	150, 1176
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	6 cut(s)	30, 110, 125, 525, 671, 1022
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	3 cut(s)	459, 570, 1045
HpaII	CCGG	2 cut(s)	150, 1176
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	4 cut(s)	331, 756, 973, 1127
Hpy188I	TCNGA	4 cut(s)	307, 738, 997, 1237
Hpy188III	TCNNGA	8 cut(s)	14, 150, 164, 374, 528, 911, 1034, 1176
Hpy8I	GTNNAC	4 cut(s)	331, 756, 973, 1127
HpyAV	CCTTC	3 cut(s)	649, 736, 1034
HpyCH4III	ACNGT	3 cut(s)	220, 727, 814
HpyCH4IV	ACGT	2 cut(s)	1183, 1203
HpyF10VI	GCNNNNNNNGC	6 cut(s)	591, 600, 728, 935, 1114, 1219
HpyF3I	CTNAG	5 cut(s)	405, 1065, 1074, 1113, 1209
HpySE526I	ACGT	2 cut(s)	1183, 1203
Hsp92II	CATG	6 cut(s)	30, 110, 125, 525, 671, 1022
HspAI	GCGC	1 cut(s)	481
Kpn2I	TCCGGA	2 cut(s)	149, 1175
Kzo9I	GATC	4 cut(s)	10, 160, 862, 1030
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	658, 1178
Lsp1109I	GCAGC	2 cut(s)	578, 862
LweI	GCATC	4 cut(s)	160, 214, 403, 784
MaeI	CTAG	2 cut(s)	51, 528
MaeII	ACGT	2 cut(s)	1183, 1203
MaeIII	GTNAC	3 cut(s)	460, 1184, 1199
MalI	GATC	4 cut(s)	12, 162, 864, 1032
MboI	GATC	4 cut(s)	10, 160, 862, 1030
MboII	GAAGA	9 cut(s)	106, 109, 262, 422, 579, 625, 717, 751, 782
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	587, 1183
MluCI	AATT	8 cut(s)	465, 500, 872, 884, 976, 1163, 1217, 1296
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	3 cut(s)	36, 598, 802
MnlI	CCTC	7 cut(s)	34, 151, 825, 886, 889, 1030, 1218
MroI	TCCGGA	2 cut(s)	149, 1175
MseI	TTAA	6 cut(s)	69, 111, 213, 690, 837, 882
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	2 cut(s)	853, 1053
MspI	CCGG	2 cut(s)	150, 1176
MwoI	GCNNNNNNNGC	6 cut(s)	591, 600, 728, 935, 1114, 1219
NdeI	CATATG	1 cut(s)	1306
NdeII	GATC	4 cut(s)	10, 160, 862, 1030
NlaIII	CATG	6 cut(s)	30, 110, 125, 525, 671, 1022
NmuCI	GTSAC	2 cut(s)	460, 1199
NspI	RCATGY	2 cut(s)	110, 525
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	570, 1045
PflMI	CCANNNNNTGG	3 cut(s)	673, 1159, 1261
PkrI	GCNGC	4 cut(s)	229, 593, 852, 1055
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	1184
PshBI	ATTAAT	1 cut(s)	690
PstI	CTGCAG	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	951, 1126
RsaNI	GTAC	2 cut(s)	950, 1125
RseI	CAYNNNNRTG	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	6 cut(s)	69, 111, 213, 690, 837, 882
SatI	GCNGC	4 cut(s)	228, 592, 851, 1054
Sau3AI	GATC	4 cut(s)	10, 160, 862, 1030
ScaI	AGTACT	1 cut(s)	951
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	587, 1183
SfaNI	GCATC	4 cut(s)	160, 214, 403, 784
SfcI	CTRYAG	3 cut(s)	427, 749, 841
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	8 cut(s)	465, 500, 872, 884, 976, 1163, 1217, 1296
SsiI	CCGC	4 cut(s)	228, 853, 1053, 1056
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	2 cut(s)	51, 528
TaaI	ACNGT	3 cut(s)	220, 727, 814
TaiI	ACGT	2 cut(s)	1186, 1206
TaqI	TCGA	3 cut(s)	284, 535, 565
TaqII	GACCGA	1 cut(s)	432
TasI	AATT	8 cut(s)	465, 500, 872, 884, 976, 1163, 1217, 1296
TatI	WGTACW	1 cut(s)	949
TauI	GCSGC	2 cut(s)	230, 1056
TfiI	GAWTC	2 cut(s)	570, 1045
Tru1I	TTAA	6 cut(s)	69, 111, 213, 690, 837, 882
Tru9I	TTAA	6 cut(s)	69, 111, 213, 690, 837, 882
TscAI	CASTG	2 cut(s)	262, 817
TseFI	GTSAC	2 cut(s)	460, 1199
TseI	GCWGC	2 cut(s)	591, 850
Tsp45I	GTSAC	2 cut(s)	460, 1199
TspDTI	ATGAA	9 cut(s)	254, 493, 626, 642, 803, 1007, 1184, 1283, 1293
TspRI	CASTG	2 cut(s)	262, 817
Van91I	CCANNNNNTGG	3 cut(s)	673, 1159, 1261
VspI	ATTAAT	1 cut(s)	690
XapI	RAATTY	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	2 cut(s)	110, 525
XspI	CTAG	2 cut(s)	51, 528
ZrmI	AGTACT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.