Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001446

Physical Location & Seq

Genomic Coordinates Forward (+)

56347780 .. 56357321

Gene Structure 9542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0439700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATTTGCAAGAAGGAAGATATCTTGCCGAACTATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCCACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAAATTGTGGTTCTGTGGATTCCTTCGAACGTTCAAAAGATGTTGTGGAGAAGGACCGAAATGTTCCTGATGCTACAATTATATCAGAGATTGACCACACCATGAAGAAGTATGCTGATAATTTACTTCAAGTTATGGAAGCCATGGAAGAGTACGTCAGAGAAGCTCCCCGTGTCTCAATAGTTCTCAAGGAGGTGATTGACAATAAAATTTCTGCCCCCAAGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTGAACCAGTAAAAGTGGTAGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTAGGGGCAATACCAAAAGTACTAATTTCTGCATCTTGTCATCAAGTGCTATTTTCCGAGTGCAGCAGCAGCACTGTGTCTCAACGAAGTTGTGTAGGTTGGTCATGCTGGAATTTTCAGCCACACAAAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCTGGTGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

252

Amino Acids

27.64

Weight (kDa)

4.91

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250
fragaria_vesca	FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511
malus_domestica	MD17G1129100.v1.1
prunus_persica	Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1
pyrus_communis	pycom17g12130
rosa_chinensis	RchiOBHm_Chr2g0153551
rosa_laevigata	RLG00000020709
rosa_multiflora	Rmu_sc0003976.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094930
rosa_rugosa	Rorug02G0439500 Rorug02G0439600 Rorug02G0439700 Rorug02G0439800
rosa_samantha	Rh2AG503200 Rh2BG513900 Rh2CG489000 Rh2DG525600
rosa_wichuraiana	Rw2G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	3 cut(s)	117, 130, 524
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	387, 686
AfaI	GTAC	2 cut(s)	332, 595
AfiI	CCNNNNNNNGG	3 cut(s)	62, 107, 576
AgsI	TTSAA	5 cut(s)	213, 308, 503, 526, 726
AjiI	CACGTC	1 cut(s)	449
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	358, 658
AlwI	GGATC	3 cut(s)	117, 130, 524
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	548, 637, 640, 643
ApoI	RAATTY	2 cut(s)	387, 686
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	560, 649, 652, 655
BccI	CCATC	3 cut(s)	56, 65, 182
BcoDI	GTCTC	2 cut(s)	358, 658
BfaI	CTAG	2 cut(s)	129, 576
BfmI	CTRYAG	2 cut(s)	495, 546
BisI	GCNGC	4 cut(s)	549, 638, 641, 644
BlsI	GCNGC	4 cut(s)	550, 639, 642, 645
BmcAI	AGTACT	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	67, 124
BmsI	GCATC	4 cut(s)	82, 238, 615, 725
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	321, 399, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 107, 576
Bse1I	ACTGG	2 cut(s)	67, 476
BseDI	CCNNGG	3 cut(s)	321, 399, 570
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	62, 107, 576
BseNI	ACTGG	2 cut(s)	67, 476
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	4 cut(s)	560, 649, 652, 655
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	62, 107, 576
BsmAI	GTCTC	2 cut(s)	358, 658
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	122, 529, 751
Bsp19I	CCATGG	2 cut(s)	321, 570
BspANI	GGCC	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	67, 124
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	3 cut(s)	117, 130, 524
BspT104I	TTCGAA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	67, 476
BssECI	CCNNGG	3 cut(s)	321, 399, 570
BssMI	GATC	3 cut(s)	122, 529, 751
BssT1I	CCWWGG	3 cut(s)	321, 399, 570
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	3 cut(s)	76, 321, 735
BstBI	TTCGAA	1 cut(s)	204
BstDSI	CCRYGG	2 cut(s)	321, 570
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	125, 532, 754
BstMAI	GTCTC	2 cut(s)	358, 658
BstMBI	GATC	3 cut(s)	122, 529, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstSFI	CTRYAG	2 cut(s)	495, 546
BstV1I	GCAGC	4 cut(s)	560, 649, 652, 655
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	2 cut(s)	321, 570
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	60, 646
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	331, 594
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	4 cut(s)	280, 322, 571, 679
CviJI	RGCY	9 cut(s)	46, 68, 134, 320, 344, 413, 575, 695, 746
CviKI_1	RGCY	9 cut(s)	46, 68, 134, 320, 344, 413, 575, 695, 746
CviQI	GTAC	2 cut(s)	331, 594
DpnI	GATC	3 cut(s)	124, 531, 753
DpnII	GATC	3 cut(s)	122, 529, 751
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	3 cut(s)	76, 321, 735
EarI	CTCTTC	3 cut(s)	76, 321, 735
Eco130I	CCWWGG	3 cut(s)	321, 399, 570
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	3 cut(s)	321, 399, 570
ErhI	CCWWGG	3 cut(s)	321, 399, 570
FaeI	CATG	4 cut(s)	283, 325, 574, 682
FaiI	YATR	9 cut(s)	36, 260, 281, 291, 314, 323, 416, 572, 680
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	279, 321, 570, 678
Fnu4HI	GCNGC	4 cut(s)	549, 638, 641, 644
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	549, 638, 641, 644
FspBI	CTAG	2 cut(s)	129, 576
GluI	GCNGC	4 cut(s)	549, 638, 641, 644
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	283, 325, 574, 682
HinfI	GANTC	2 cut(s)	149, 197
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	5 cut(s)	110, 179, 265, 338, 632
Hpy188III	TCNNGA	2 cut(s)	245, 539
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	7, 211, 223, 465
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	3 cut(s)	208, 333, 448
HpyCH4V	TGCA	5 cut(s)	9, 548, 606, 637, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpySE526I	ACGT	3 cut(s)	208, 333, 448
Hsp92II	CATG	4 cut(s)	283, 325, 574, 682
Kzo9I	GATC	3 cut(s)	122, 529, 751
LmnI	GCTCC	2 cut(s)	65, 349
Lsp1109I	GCAGC	4 cut(s)	560, 649, 652, 655
LweI	GCATC	4 cut(s)	82, 238, 615, 725
MaeI	CTAG	2 cut(s)	129, 576
MaeII	ACGT	3 cut(s)	208, 333, 448
MalI	GATC	3 cut(s)	124, 531, 753
MboI	GATC	3 cut(s)	122, 529, 751
MboII	GAAGA	6 cut(s)	29, 63, 295, 338, 574, 752
MflI	RGATCY	1 cut(s)	122
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	7 cut(s)	181, 255, 298, 387, 598, 686, 721
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	9 cut(s)	79, 104, 110, 113, 364, 412, 436, 474, 736
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	643
NcoI	CCATGG	2 cut(s)	321, 570
NdeII	GATC	3 cut(s)	122, 529, 751
NlaIII	CATG	4 cut(s)	283, 325, 574, 682
NlaIV	GGNNCC	2 cut(s)	67, 124
NspV	TTCGAA	1 cut(s)	204
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	550, 639, 642, 645
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	67, 124
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	332, 595
RsaNI	GTAC	2 cut(s)	331, 594
SatI	GCNGC	4 cut(s)	549, 638, 641, 644
Sau3AI	GATC	3 cut(s)	122, 529, 751
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	158
SfaNI	GCATC	4 cut(s)	82, 238, 615, 725
SfcI	CTRYAG	2 cut(s)	495, 546
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	7 cut(s)	181, 255, 298, 387, 598, 686, 721
SspMI	CTAG	2 cut(s)	129, 576
StyI	CCWWGG	3 cut(s)	321, 399, 570
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	3 cut(s)	211, 336, 451
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	7 cut(s)	181, 255, 298, 387, 598, 686, 721
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	2 cut(s)	67, 653
TseI	GCWGC	4 cut(s)	548, 637, 640, 643
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	67, 653
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	387, 686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	129, 576
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.