Rh2BG513900

Protein FAR1-RELATED SEQUENCE 2 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
72186067 .. 72190141
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG513900.1

Sequence Viewer

Length: 2280 bp
ATGGAGATAGATCTTGAACTGCCCTCATGTGAGCAGGGCAAGTTAGAGACTAGGTTGGATAAAGATGTTAATATTGTGGAGACAAATGTTGAGAAGAAGAGTGAGCATGTTAAAGAAGCTCATGGATTGAGAGCAAACGAGAGTGTTTCTGGAGTTGAGGATCAAGATGATGCGAACAATGTTGAAGTTAGAGTAGTTGATAAGGTGGTTGTTAATACTGTGGATGCCGCAGATGAGATGAATGTTGAGAAGAGCGGTGAGGCTGTTGGGGAAGCTCGTGGGTCGAGTGCAAACAAAAGTGCTTCTGATTTTCACGGGCAAGATGATGTGAACAATGTTGTGGCGAATGTAGTTGATAAGGGGTTTGTTGTTCGTGAGCCTGAAAATGGTTTGGAGTTTGAGACTAAGGAAGATGCTTACTCCTACTACAGAGAATATGCTCGCTCGGTGGGGTTTGGAGTCACAATTATAGCCAGTCGGCGCTCTAAAAAAACTGGAAAATTCATTGACATAAAGCTTGCATGTTCTAGATATCGAAAGCAGGAAGCTGGCGATACAGAAAACCGAAGAATCCAACTATTGAGCACAGGCTGCAAAGCTGGCTTGCAAATGAAGAAGCGAGAGAACGAAAAATGGTATATACATAGTTTTGTGAAGGAGCATAACCATGAGATGGGGGATGGTTTTATTAATGCTTTAGGGGGAAGAAACAAGAGACCTACAACTGTTGCTTGTCAGAAGAAGGGTCTGCAGTTCACTTTAGATAAGGAAGATGTCCAAGTAATGTTTGAACAGTTGATGTGTATGCAGGACGAGAATCCCAACTTCTTCTATGCCATAGAGTTTGACAATGACAAACGATTGAGAAGTGTGTTTTGGGTTGATGCAAACGGTAGGCGTGATTATAACAGTTTCTGTGATGTAGTCTTGTTTGATACTCATTATGTTAGAAACAACTATAAAATTCCTTTAGTTCCTATTGTTGGAGTTAATCATCACTTTCAGTACATTTTACTTGGATGTGCATTGCTTGGAGATGAGACTACAGCGGCTTTTGTTTGGTTAATGCGGACATGGCTAAAAGCTGTGGGTGGCCAAGCTCCAAGAGTGGTTATTACTGATCAAGAGAAATACTTGAAGGAAGCTGTAGCAGATGTATTTACTGATGCATGCCATCGTTTTTGTTTATGGCATGTATTGACTAGGATTCATGACAATGTGGGTTCCATAAATGAAGATGCAATATTTCAGGCAAAATTGAACAAATGGATTTACCGGTCTTGGACTGTTCAACAATTTGAACAGAGATGGTGGAAATTGATTAACAGATTTGAACTAAGGGAAAATGAACGCCTTTGCTTATTCTCATTGTATGAAGATCGGAAATACTGGGCTCCAGCTTATATGCAGGATTCGTGTTCAGCTGGAATGTCAACAGTTGAACGATCTGGAAGTATAACTTCATTTTTTGATAGGTACATATCTCAAGAAGCTATGGTTAAGGATTTTATGGAGCAGTACAAAACATTTTTGAAAGATAGGTACGACATGGAAGCAAATGCTGCTTTTGAAGCACAGAATAAACAACCTGAATTAAGATCACTCTCACCTTTTGAGAAACAAATGTCAACTATATATACAGATACAATATTTAGAAAATTTCAAGGCGAGGTTTTGGGAGTAGATTCTTGTCATTTGCATAAGGAAGGTCAAGATGAAGCAACTGTAATATTCCGAGTTGATGACTTGGAAGAACGGCAGAATTTCATTGTAGCGTGGAATGAACCAGAATTAAGAGTATGCTGTTTATGTCATTCATTTGAATACAAAGGTTTTCTCTGTAGACATGCACTTCTGGTCCTTCATATGTCTGGTGTTTCCAGAATCCCATCCCATTACATTTTGAAGCGCTGGATGAAAGATGCAAGAGTTAGGCACACTGTTAGTGATGTGTCAAAGAGGCTTAACTACAGGGTGCAGCGGTTCAATGATCTGTGTAAATTAGCCGTTAAATTGGGTGAGGAGGGGTCTTTGTCTCCAGAAACTTACCAGATTGCATTTCAAGCATTAGACGAAGTACTGAAACAATGTGTCAATGTCAACAATTCTGTAAGGGGGGTTTCAGAACCCAATCCATCATCTATTCATGGGTCAAATGATCTTGAGGAAGGGAATCACAGCGGCGGAATGGCTAAGTTGTCTAAGAAAAAGAAAACGCACAGAAAAAGAAAGGTTGGTGAAGGCTTGATCTTTGTCACGCAGACTAATTATTTATCCTAA

Protein Analysis

759

Amino Acids

87.39

Weight (kDa)

6.38

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 141 - 225 2.3e-20 FAR1 DNA-binding domain
MULE PF10551 308 - 400 3.6e-24 MULE transposase domain
Transposase_mut PF00872 328 - 443 1e-05 Transposase, Mutator family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
AccB7I CCANNNNNTGG 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 1843
AciI CCGC 7 cut(s) 228, 255, 1049, 1069, 1981, 2181, 2184
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 1093
AcsI RAATTY 4 cut(s) 500, 963, 1658, 1762
AfaI GTAC 5 cut(s) 1007, 1478, 1520, 1544, 2079
AfeI AGCGCT 1 cut(s) 1910
AfiI CCNNNNNNNGG 3 cut(s) 386, 673, 983
AgeI ACCGGT 1 cut(s) 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 859, 891
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 6 cut(s) 41, 74, 395, 709, 1034, 2040
AlwI GGATC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 915
Aor51HI AGCGCT 1 cut(s) 1910
AoxI GGCC 1 cut(s) 1093
ApeKI GCWGC 3 cut(s) 591, 1562, 1978
ApoI RAATTY 4 cut(s) 500, 963, 1658, 1762
AseI ATTAAT 1 cut(s) 690
AsiGI ACCGGT 1 cut(s) 1275
AspLEI GCGC 2 cut(s) 483, 1911
AspS9I GGNCC 1 cut(s) 1858
AsuHPI GGTGA 4 cut(s) 269, 1599, 2030, 2249
AvaII GGWCC 1 cut(s) 1858
BalI TGGCCA 1 cut(s) 1095
BanII GRGCYC 1 cut(s) 1396
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 578, 1549, 1990
BccI CCATC 6 cut(s) 667, 674, 1182, 1302, 1897, 2143
BceAI ACGGC 2 cut(s) 1772, 1991
BclI TGATCA 1 cut(s) 1120
BcoDI GTCTC 6 cut(s) 41, 74, 395, 709, 1034, 2040
BfaI CTAG 3 cut(s) 51, 528, 1203
BfmI CTRYAG 6 cut(s) 427, 749, 1044, 1146, 1840, 1969
BfoI RGCGCY 2 cut(s) 484, 1912
BglII AGATCT 1 cut(s) 10
BisI GCNGC 6 cut(s) 228, 592, 1050, 1563, 1979, 2182
BlsI GCNGC 6 cut(s) 229, 593, 1051, 1564, 1980, 2183
BmcAI AGTACT 1 cut(s) 2079
Bme18I GGWCC 1 cut(s) 1858
BmgT120I GGNCC 1 cut(s) 1858
BmiI GGNNCC 2 cut(s) 1225, 1395
BmrI ACTGGG 1 cut(s) 1399
BmsI GCATC 7 cut(s) 160, 214, 403, 874, 1156, 1228, 1912
BmuI ACTGGG 1 cut(s) 1399
BpmI CTGGAG 3 cut(s) 171, 1380, 2022
BpuEI CTTGAG 2 cut(s) 1470, 2183
BsaI GGTCTC 1 cut(s) 709
BsaWI WCCGGW 1 cut(s) 1275
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 673, 983
Bse118I RCCGGY 1 cut(s) 1275
Bse1I ACTGG 3 cut(s) 474, 499, 1394
Bse3DI GCAATG 1 cut(s) 1025
BseGI GGATG 5 cut(s) 229, 685, 1025, 1889, 1920
BseLI CCNNNNNNNGG 3 cut(s) 386, 673, 983
BseMI GCAATG 1 cut(s) 1025
BseNI ACTGG 3 cut(s) 474, 499, 1394
BseRI GAGGAG 1 cut(s) 2036
BseXI GCAGC 3 cut(s) 578, 1549, 1990
BsgI GTGCAG 1 cut(s) 1997
BshFI GGCC 1 cut(s) 1095
BshTI ACCGGT 1 cut(s) 1275
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 1276
BslI CCNNNNNNNGG 3 cut(s) 386, 673, 983
BsmAI GTCTC 6 cut(s) 41, 74, 395, 709, 1034, 2040
BsnI GGCC 1 cut(s) 1095
Bso31I GGTCTC 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 587, 1396
Bsp143I GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
BspACI CCGC 7 cut(s) 228, 255, 1049, 1069, 1981, 2181, 2184
BspANI GGCC 1 cut(s) 1095
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 2 cut(s) 1225, 1395
BspMAI CTGCAG 1 cut(s) 753
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 709
BsrBI CCGCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 1275
BsrI ACTGG 3 cut(s) 474, 499, 1394
BssAI RCCGGY 1 cut(s) 1275
BssMI GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 9 cut(s) 220, 727, 795, 893, 911, 1288, 1438, 1726, 1942
Bst6I CTCTTC 2 cut(s) 92, 245
BstAPI GCANNNNNTGC 2 cut(s) 591, 1562
BstC8I GCNNGC 6 cut(s) 442, 519, 550, 601, 605, 1171
BstDEI CTNAG 4 cut(s) 405, 1337, 2193, 2202
BstF5I GGATG 5 cut(s) 229, 685, 1025, 1889, 1920
BstH2I RGCGCY 2 cut(s) 484, 1912
BstHHI GCGC 2 cut(s) 483, 1911
BstKTI GATC 9 cut(s) 13, 163, 1123, 1381, 1448, 1601, 1993, 2161, 2250
BstMAI GTCTC 6 cut(s) 41, 74, 395, 709, 1034, 2040
BstMBI GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
BstMWI GCNNNNNNNGC 6 cut(s) 591, 600, 1075, 1562, 1571, 2063
BstNSI RCATGY 5 cut(s) 110, 525, 1173, 1196, 1850
BstSFI CTRYAG 6 cut(s) 427, 749, 1044, 1146, 1840, 1969
BstV1I GCAGC 3 cut(s) 578, 1549, 1990
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 1095
BtsCI GGATG 5 cut(s) 229, 685, 1025, 1889, 1920
BtsIMutI CAGTG 1 cut(s) 1938
Cac8I GCNNGC 6 cut(s) 442, 519, 550, 601, 605, 1171
CaiI CAGNNNCTG 1 cut(s) 915
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 2 cut(s) 483, 1911
Cfr10I RCCGGY 1 cut(s) 1275
Cfr13I GGNCC 1 cut(s) 1858
Csp6I GTAC 5 cut(s) 1006, 1477, 1519, 1543, 2078
CspAI ACCGGT 1 cut(s) 1275
CviQI GTAC 5 cut(s) 1006, 1477, 1519, 1543, 2078
DdeI CTNAG 4 cut(s) 405, 1337, 2193, 2202
DpnI GATC 9 cut(s) 12, 162, 1122, 1380, 1447, 1600, 1992, 2160, 2249
DpnII GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
EaeI YGGCCR 1 cut(s) 1093
Eam1104I CTCTTC 2 cut(s) 92, 245
EarI CTCTTC 2 cut(s) 92, 245
EciI GGCGGA 1 cut(s) 2199
Eco24I GRGCYC 1 cut(s) 1396
Eco31I GGTCTC 1 cut(s) 709
Eco32I GATATC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 1858
Eco47III AGCGCT 1 cut(s) 1910
EcoRV GATATC 1 cut(s) 533
EcoT22I ATGCAT 1 cut(s) 1171
EcoT38I GRGCYC 1 cut(s) 1396
FalI AAGNNNNNCTT 2 cut(s) 1444, 1476
FauNDI CATATG 1 cut(s) 1866
FbaI TGATCA 1 cut(s) 1120
FblI GTMKAC 1 cut(s) 1843
Fnu4HI GCNGC 6 cut(s) 228, 592, 1050, 1563, 1979, 2182
FokI GGATG 5 cut(s) 236, 692, 1032, 1876, 1927
FriOI GRGCYC 1 cut(s) 1396
Fsp4HI GCNGC 6 cut(s) 228, 592, 1050, 1563, 1979, 2182
FspBI CTAG 3 cut(s) 51, 528, 1203
GlaI GCGC 2 cut(s) 482, 1910
GluI GCNGC 6 cut(s) 228, 592, 1050, 1563, 1979, 2182
GsuI CTGGAG 3 cut(s) 171, 1380, 2022
HaeII RGCGCY 2 cut(s) 484, 1912
HaeIII GGCC 1 cut(s) 1095
HapII CCGG 1 cut(s) 1276
HhaI GCGC 2 cut(s) 483, 1911
Hin6I GCGC 2 cut(s) 481, 1909
HinP1I GCGC 2 cut(s) 481, 1909
HincII GTYRAC 3 cut(s) 1434, 1629, 2101
HindII GTYRAC 3 cut(s) 1434, 1629, 2101
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 8 cut(s) 459, 570, 817, 1207, 1412, 1685, 1884, 2173
HpaII CCGG 1 cut(s) 1276
HphI GGTGA 4 cut(s) 269, 1599, 2030, 2249
Hpy166II GTNNAC 6 cut(s) 331, 756, 1434, 1629, 1844, 2101
Hpy188I TCNGA 5 cut(s) 307, 738, 1383, 1736, 2125
Hpy8I GTNNAC 6 cut(s) 331, 756, 1434, 1629, 1844, 2101
HpyAV CCTTC 7 cut(s) 649, 736, 1132, 1700, 1871, 2162, 2234
HpyCH4III ACNGT 9 cut(s) 220, 727, 795, 893, 911, 1288, 1438, 1726, 1942
HpyF10VI GCNNNNNNNGC 6 cut(s) 591, 600, 1075, 1562, 1571, 2063
HpyF3I CTNAG 4 cut(s) 405, 1337, 2193, 2202
HspAI GCGC 2 cut(s) 481, 1909
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 4 cut(s) 658, 1105, 1399, 1513
Lsp1109I GCAGC 3 cut(s) 578, 1549, 1990
LweI GCATC 7 cut(s) 160, 214, 403, 874, 1156, 1228, 1912
MaeI CTAG 3 cut(s) 51, 528, 1203
MaeIII GTNAC 2 cut(s) 460, 2254
MalI GATC 9 cut(s) 12, 162, 1122, 1380, 1447, 1600, 1992, 2160, 2249
MbiI CCGCTC 1 cut(s) 255
MboI GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 587, 1396
MlsI TGGCCA 1 cut(s) 1095
MluNI TGGCCA 1 cut(s) 1095
MlyI GAGTC 1 cut(s) 468
MmeI TCCRAC 3 cut(s) 36, 598, 964
MnlI CCTC 8 cut(s) 34, 151, 253, 1663, 1953, 2014, 2017, 2158
Mox20I TGGCCA 1 cut(s) 1095
Mph1103I ATGCAT 1 cut(s) 1171
MscI TGGCCA 1 cut(s) 1095
MslI CAYNNNNRTG 2 cut(s) 666, 1215
Msp20I TGGCCA 1 cut(s) 1095
MspA1I CMGCKG 4 cut(s) 1049, 1424, 1981, 2181
MspI CCGG 1 cut(s) 1276
MwoI GCNNNNNNNGC 6 cut(s) 591, 600, 1075, 1562, 1571, 2063
NdeI CATATG 1 cut(s) 1866
NdeII GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
NlaIV GGNNCC 2 cut(s) 1225, 1395
NmuCI GTSAC 2 cut(s) 460, 2254
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 5 cut(s) 110, 525, 1173, 1196, 1850
PaeI GCATGC 1 cut(s) 1173
PagI TCATGA 1 cut(s) 1210
PciSI GCTCTTC 1 cut(s) 245
PfeI GAWTC 7 cut(s) 570, 817, 1207, 1412, 1685, 1884, 2173
PflMI CCANNNNNTGG 1 cut(s) 673
PinAI ACCGGT 1 cut(s) 1275
PkrI GCNGC 6 cut(s) 229, 593, 1051, 1564, 1980, 2183
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 690
PsiI TTATAA 1 cut(s) 906
PspN4I GGNNCC 2 cut(s) 1225, 1395
PspPI GGNCC 1 cut(s) 1858
PstI CTGCAG 1 cut(s) 753
PstNI CAGNNNCTG 1 cut(s) 915
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 5 cut(s) 1007, 1478, 1520, 1544, 2079
RsaNI GTAC 5 cut(s) 1006, 1477, 1519, 1543, 2078
RseI CAYNNNNRTG 2 cut(s) 666, 1215
SapI GCTCTTC 1 cut(s) 245
SatI GCNGC 6 cut(s) 228, 592, 1050, 1563, 1979, 2182
Sau3AI GATC 9 cut(s) 10, 160, 1120, 1378, 1445, 1598, 1990, 2158, 2247
Sau96I GGNCC 1 cut(s) 1858
ScaI AGTACT 1 cut(s) 2079
SchI GAGTC 1 cut(s) 468
SduI GDGCHC 2 cut(s) 587, 1396
SfaNI GCATC 7 cut(s) 160, 214, 403, 874, 1156, 1228, 1912
SfcI CTRYAG 6 cut(s) 427, 749, 1044, 1146, 1840, 1969
SinI GGWCC 1 cut(s) 1858
SmiMI CAYNNNNRTG 2 cut(s) 666, 1215
SmlI CTYRAG 2 cut(s) 1485, 2162
SmoI CTYRAG 2 cut(s) 1485, 2162
SphI GCATGC 1 cut(s) 1173
SsiI CCGC 7 cut(s) 228, 255, 1049, 1069, 1981, 2181, 2184
SspI AATATT 4 cut(s) 73, 1245, 1650, 1731
SspMI CTAG 3 cut(s) 51, 528, 1203
TaaI ACNGT 9 cut(s) 220, 727, 795, 893, 911, 1288, 1438, 1726, 1942
TaqI TCGA 2 cut(s) 284, 535
TatI WGTACW 3 cut(s) 1005, 1518, 2077
TauI GCSGC 3 cut(s) 230, 1052, 2184
TfiI GAWTC 7 cut(s) 570, 817, 1207, 1412, 1685, 1884, 2173
TscAI CASTG 1 cut(s) 1945
TseFI GTSAC 2 cut(s) 460, 2254
TseI GCWGC 3 cut(s) 591, 1562, 1978
Tsp45I GTSAC 2 cut(s) 460, 2254
TspRI CASTG 1 cut(s) 1945
Van91I CCANNNNNTGG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 1858
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 4 cut(s) 500, 963, 1658, 1762
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 5 cut(s) 110, 525, 1173, 1196, 1850
XmiI GTMKAC 1 cut(s) 1843
XspI CTAG 3 cut(s) 51, 528, 1203
ZrmI AGTACT 1 cut(s) 2079
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.