Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001446

Physical Location & Seq

Genomic Coordinates Reverse (-)

56299089 .. 56300082

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0439500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACCATTGTCTTCGTCCCAGACAGAGGGAGTTCTTCATTAGCTTCACAAAGGGCCAGCTATCTGGGTTTTATTGGGATTGTTTGATATTTGCATTCATTGAAAATTTGGGCATTGTTGGCTATCTGGGTGTGGTTCTTTGTATGGTTTGCAACTCTGCTAATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCACGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTGAAGTCCGTGTGTAGTGAGGATGTGACACAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACAGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCAAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

178

Amino Acids

19.79

Weight (kDa)

4.73

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	65 - 178	1.5e-15	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250
fragaria_vesca	FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511
malus_domestica	MD17G1129100.v1.1
prunus_persica	Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1
pyrus_communis	pycom17g12130
rosa_chinensis	RchiOBHm_Chr2g0153551
rosa_laevigata	RLG00000020709
rosa_multiflora	Rmu_sc0003976.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094930
rosa_rugosa	Rorug02G0439500 Rorug02G0439600 Rorug02G0439700 Rorug02G0439800
rosa_samantha	Rh2AG503200 Rh2BG513900 Rh2CG489000 Rh2DG525600
rosa_wichuraiana	Rw2G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	106
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	104, 238, 314, 373
AluBI	AGCT	8 cut(s)	45, 61, 179, 206, 269, 322, 455, 464
AluI	AGCT	8 cut(s)	45, 61, 179, 206, 269, 322, 455, 464
Alw26I	GTCTC	1 cut(s)	518
AoxI	GGCC	2 cut(s)	55, 524
ApeKI	GCWGC	3 cut(s)	203, 319, 452
ApoI	RAATTY	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	4, 55, 524
AvaII	GGWCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	215, 331, 464
BccI	CCATC	2 cut(s)	182, 220
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	517
BisI	GCNGC	3 cut(s)	204, 320, 453
BlsI	GCNGC	3 cut(s)	205, 321, 454
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 55, 524
BmsI	GCATC	1 cut(s)	373
BoxI	GACNNNNGTC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	193, 262
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	215, 331, 464
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	57, 526
BslFI	GGGAC	2 cut(s)	3, 449
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	3, 449
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	57, 526
Bso31I	GGTCTC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	220, 337, 481
BspANI	GGCC	2 cut(s)	57, 526
BspCNI	CTCAG	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	220, 337, 481
Bst4CI	ACNGT	3 cut(s)	334, 446, 521
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	59, 177
BstDEI	CTNAG	2 cut(s)	270, 465
BstF5I	GGATG	2 cut(s)	193, 262
BstKTI	GATC	3 cut(s)	223, 340, 484
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	3 cut(s)	220, 337, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 203, 461
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	215, 331, 464
BstV2I	GAAGAC	1 cut(s)	5
BstXI	CCANNNNNNTGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	57, 526
BtsCI	GGATG	2 cut(s)	193, 262
BtsIMutI	CAGTG	2 cut(s)	278, 526
Cac8I	GCNNGC	2 cut(s)	59, 177
Cfr13I	GGNCC	3 cut(s)	4, 55, 524
Csp6I	GTAC	1 cut(s)	393
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	270, 465
DpnI	GATC	3 cut(s)	222, 339, 483
DpnII	GATC	3 cut(s)	220, 337, 481
DraI	TTTAAA	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	200
FaiI	YATR	7 cut(s)	146, 362, 368, 409, 428, 458, 497
FaqI	GGGAC	2 cut(s)	3, 449
Fnu4HI	GCNGC	3 cut(s)	204, 320, 453
FokI	GGATG	2 cut(s)	200, 269
Fsp4HI	GCNGC	3 cut(s)	204, 320, 453
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	3 cut(s)	204, 320, 453
HaeIII	GGCC	2 cut(s)	57, 526
HinfI	GANTC	1 cut(s)	416
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	334, 446, 521
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	95, 153, 203, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 203, 461
HpyF3I	CTNAG	2 cut(s)	270, 465
HpySE526I	ACGT	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	220, 337, 481
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	34, 51, 71, 113, 170, 189, 231, 408, 409
Lsp1109I	GCAGC	3 cut(s)	215, 331, 464
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	259, 280, 290
MalI	GATC	3 cut(s)	222, 339, 483
MboI	GATC	3 cut(s)	220, 337, 481
MboII	GAAGA	4 cut(s)	5, 28, 411, 476
MluCI	AATT	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	21, 247, 406, 502, 537
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	3 cut(s)	179, 206, 322
Mva1269I	GAATGC	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	120, 203, 461
NdeII	GATC	3 cut(s)	220, 337, 481
NmuCI	GTSAC	3 cut(s)	259, 280, 290
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	205, 321, 454
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	200
PspPI	GGNCC	3 cut(s)	4, 55, 524
PvuII	CAGCTG	3 cut(s)	179, 206, 322
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	3 cut(s)	204, 320, 453
Sau3AI	GATC	3 cut(s)	220, 337, 481
Sau96I	GGNCC	3 cut(s)	4, 55, 524
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	461
TaaI	ACNGT	3 cut(s)	334, 446, 521
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	2 cut(s)	278, 526
TseFI	GTSAC	3 cut(s)	259, 280, 290
TseI	GCWGC	3 cut(s)	203, 319, 452
Tsp45I	GTSAC	3 cut(s)	259, 280, 290
TspDTI	ATGAA	3 cut(s)	28, 88, 390
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	278, 526
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	106
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.