Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001446

Physical Location & Seq

Genomic Coordinates Forward (+)

56369853 .. 56370083

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0439800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

76

Amino Acids

8.89

Weight (kDa)

6.04

Isoelectric Point (pI)

71.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250 AT2G32250
fragaria_vesca	FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511 FvH4_6g39511
malus_domestica	MD17G1129100.v1.1
prunus_persica	Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1 Prupe.3G186000_v2.0.a1
pyrus_communis	pycom17g12130
rosa_chinensis	RchiOBHm_Chr2g0153551
rosa_laevigata	RLG00000020709
rosa_multiflora	Rmu_sc0003976.1_g000006
rosa_roxburghii	Rroxscaffold_2G00094930
rosa_rugosa	Rorug02G0439500 Rorug02G0439600 Rorug02G0439700 Rorug02G0439800
rosa_samantha	Rh2AG503200 Rh2BG513900 Rh2CG489000 Rh2DG525600
rosa_wichuraiana	Rw2G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	31, 223
AluI	AGCT	2 cut(s)	31, 223
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	79, 118
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	79, 118
BpmI	CTGGAG	2 cut(s)	117, 203
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	188, 201
Bsp143I	GATC	3 cut(s)	136, 157, 210
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	165
BssMI	GATC	3 cut(s)	136, 157, 210
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	139, 160, 213
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	136, 157, 210
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	77, 116
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	157, 210
BstYI	RGATCY	2 cut(s)	157, 210
BtsCI	GGATG	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	4 cut(s)	31, 77, 111, 223
CviKI_1	RGCY	4 cut(s)	31, 77, 111, 223
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	3 cut(s)	138, 159, 212
DpnII	GATC	3 cut(s)	136, 157, 210
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	134, 206
HpyCH4V	TGCA	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	136, 157, 210
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	53, 88, 91, 103, 130, 147
Lsp1109I	GCAGC	1 cut(s)	86
MabI	ACCWGGT	1 cut(s)	116
MalI	GATC	3 cut(s)	138, 159, 212
MboI	GATC	3 cut(s)	136, 157, 210
MflI	RGATCY	2 cut(s)	157, 210
MhlI	GDGCHC	2 cut(s)	188, 201
MnlI	CCTC	3 cut(s)	46, 53, 161
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	79, 118
MvaI	CCWGG	1 cut(s)	118
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	136, 157, 210
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	124, 147
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	157, 210
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	136, 157, 210
ScrFI	CCNGG	2 cut(s)	79, 118
SduI	GDGCHC	2 cut(s)	188, 201
SetI	ASST	3 cut(s)	33, 122, 225
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	77, 116
TaqI	TCGA	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.